G179899


Basic Information

Item Value
gene id G179899
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3411792 ~ 3414176 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204257
ATTTTTAAATTTTTATTTTCTTTGTGTCATTTATACATGAAGTCGTTACAGCAAAAGTGAGACATAAAAGAGTGGAAAGATATACCGTTTTATTTCATCTGCAACATATCAGACCTCTTTCAGATTTTATTGTCATTTACCCATTTACATATATTGATAGAAAAGTCCCTTTCCTATAACAAAGAATAATGGCTATTTGACAAATGAATATTACCAGGACATTTTACAGTTCTTTTGAAAAAGTTTTGACAGATCAGGTCTACAGACTTTCAGACAACTGACTGATTTGTTTTAAAATAGTCACCGATTTAAAACAGAGCCCCTGAACCACACAGATCAGTCGAGAGGTTATTGATCATCTATACGGAAGAGCAGCACGCTGTTGCCCAGTGTCATCTGAGCATTTGGCAGGAGGTTTATGGAGATCAGAAATCCTCCTCTGCGTTTCGGGTTCTCGAGGCCTTCAGCTCCTTGAGGCGCTCCATGCAGTCCATCAGACTCCTCTCTCCGTGCACCTTGTTGTCACGAGTCCTAACATTCACAGTGTCACTGCTCTTCTCCTTCTCACCCACCACTAAAATGAAATTGTACTGAGCTAACTGTGCATTTCTGATCTTCTTGTTCAGTGTGCAGCCTGGATCCAGGTCCACATCCGTCATCAACCCTCCCTTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU204257 True 673 lncRNA 0.41 2 3411792 3414176

Neighbor

gene id symbol gene type direction distance location
CI01000039_03359162_03369982 NA coding upstream 41389 3358895 ~ 3370403 (+)
CI01000039_03352914_03354134 GAS1A coding upstream 57316 3351530 ~ 3354476 (+)
CI01000039_03181221_03188468 FBP2 coding upstream 222557 3180393 ~ 3189235 (+)
CI01000039_03170952_03179241 FBP1.S, F16P1, FBP1B, FBP1, FBP2, FBP1A coding upstream 232519 3169850 ~ 3179273 (+)
CI01000039_02934780_02935076 NA coding upstream 476562 2934635 ~ 2935230 (+)
CI01000039_03454189_03458136 NA coding downstream 39864 3454040 ~ 3458140 (+)
CI01000039_03596770_03597721 NA coding downstream 181821 3595997 ~ 3597726 (+)
CI01000039_03651436_03658228 NA coding downstream 237260 3651436 ~ 3658264 (+)
CI01000039_03659569_03662364 NA coding downstream 245393 3659569 ~ 3662652 (+)
CI01000039_03665710_03683733 NA coding downstream 251071 3665247 ~ 3683850 (+)
G179901 NA non-coding upstream 361 3411007 ~ 3411431 (+)
G179900 NA non-coding upstream 1394 3409291 ~ 3410398 (+)
G179933 NA non-coding upstream 9336 3402034 ~ 3402456 (+)
G179909 NA non-coding upstream 39752 3371826 ~ 3372040 (+)
G179893 NA non-coding upstream 88185 3323338 ~ 3323607 (+)
G179951 NA non-coding downstream 46414 3460590 ~ 3461396 (+)
G179959 NA non-coding downstream 73872 3488048 ~ 3488365 (+)
G179961 NA non-coding downstream 95231 3509407 ~ 3541121 (+)
G179963 NA non-coding downstream 103012 3517188 ~ 3518417 (+)
G179966 NA non-coding downstream 110912 3525088 ~ 3529519 (+)
G179798 NA other upstream 279608 3129572 ~ 3132184 (+)
G179528 NA other upstream 913173 2497674 ~ 2498619 (+)
G178423 NA other upstream 2426040 966676 ~ 982406 (+)
G179903 NA other downstream 9861 3424037 ~ 3425555 (+)
CI01000039_04048342_04049635 NA other downstream 634117 4048079 ~ 4049972 (+)
G180149 NA other downstream 660700 4079419 ~ 4079563 (+)
G180156 NA other downstream 676822 4090998 ~ 4091608 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other downstream 809403 4223868 ~ 4224657 (+)

Expression


Co-expression Network