G180109


Basic Information

Item Value
gene id G180109
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3973909 ~ 3974145 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204500
TGAGGGTGAGTAATAAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAAGGAACAATATCTGATAACAAGAAAACATCAAAGTGATGAACAGTGAACTCATGTCTCACATTGTAATTACAATTAAGAAAAAATATCTGATAGCAGGATCAGAATTCACTTGTGCTCTGTGATGAGCCACTGTTTCCTTGCTTGAAACTATATCAATTTATCTATTGGGGGAAAAGGGGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204500 True 237 lncRNA 0.35 1 3973909 3974145

Neighbor

gene id symbol gene type direction distance location
CI01000039_03932128_03934945 NA coding upstream 37974 3931527 ~ 3935935 (+)
CI01000039_03782970_03797693 RTKN coding upstream 175403 3782970 ~ 3798506 (+)
CI01000039_03747667_03748958 NA coding upstream 224622 3747315 ~ 3749287 (+)
CI01000039_03694332_03696941 NA coding upstream 276839 3694332 ~ 3697070 (+)
CI01000039_03684191_03691901 MCCC2, MCCC2.S coding upstream 281977 3684191 ~ 3691932 (+)
CI01000039_04011515_04015116 GRSF1 coding downstream 37304 4011449 ~ 4015116 (+)
CI01000039_04017602_04018203 GRSF1 coding downstream 43457 4017602 ~ 4018468 (+)
CI01000039_04048342_04049635 NA coding downstream 73934 4048079 ~ 4049972 (+)
CI01000039_04058417_04059141 NA coding downstream 84198 4058343 ~ 4059526 (+)
CI01000039_04062068_04062375 NA coding downstream 87858 4062003 ~ 4062961 (+)
G180108 NA non-coding upstream 2245 3971459 ~ 3971664 (+)
G180107 NA non-coding upstream 5903 3967683 ~ 3968006 (+)
G180106 NA non-coding upstream 7984 3965654 ~ 3965925 (+)
G180103 NA non-coding upstream 21356 3952204 ~ 3952553 (+)
G180098 NA non-coding upstream 37024 3936659 ~ 3936885 (+)
G180111 NA non-coding downstream 913 3975058 ~ 3975700 (+)
G180146 NA non-coding downstream 87883 4070588 ~ 4071572 (+)
G180155 NA non-coding downstream 114826 4088971 ~ 4089226 (+)
G180156 NA non-coding downstream 116957 4090998 ~ 4091608 (+)
G179903 NA other upstream 548354 3424037 ~ 3425555 (+)
G179798 NA other upstream 841725 3129572 ~ 3132184 (+)
G179528 NA other upstream 1475290 2497674 ~ 2498619 (+)
G178423 NA other upstream 2988157 966676 ~ 982406 (+)
G180149 NA other downstream 100731 4079419 ~ 4079563 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other downstream 249434 4223868 ~ 4224657 (+)
CI01000039_04829464_04847182 ZFR other downstream 870037 4829413 ~ 4848563 (+)

Expression


Co-expression Network