G180146


Basic Information

Item Value
gene id G180146
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4070588 ~ 4071572 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204545
GTAATAACAGCCTTAGACAATCATCAAAACCTTAAACACAATGAAGATTGCAGCAGTTATTGTTTTTCTAGTCTGTCTGCTTGCTACAGATGTGCAAGGGCAGAACCAGATTCACAAAGGCAGGTGTGTCTGTGCTGACAAAGGAGTGGATGTGGTTTTACAGAAGAACATTGAGAAGTTTGAAATCATCCCTCCAGGTCCATTTTGTGGAAAACGGGAGAGCCTTAGACAATCATCAAAACCTTAAACACAATGAAGATTGCAGCAGTTATTGTTTTTCTAGTCTGTCTGCTTGCTACAGATGTACAAGGGCAGAACCAGATTCACAAAGGCAGGTGCTTCTGTGCTGACAAAGGAGTGGATGTGGTTTTACGGAAGAACATTGAGAAGTTTGAAATCATCCCTCAAAGTCCTTCTTGTGGAAAACAAGAGATTATTGTCACTTTGAAGAGTGCAGAGAGGAAATGCTTGAATCCAGAATCTAAATTCACCCAGAATTTAATCAAGCGGGCTCTTGAAAAGATGGCCCAGCAGTAGGAGATGCTCAGTGTGAATCTGGATTAGCTGCTGTGTTACGCCACTGAAGAACATCCTGATACCCATCAAACGCTGTATGACCTCTAGATGACAGTTATCACATTTGACTAGAGAACATCTGTATAAACTGTTTAGTAGTGTAAATATTTGCTTGTTAACTTATGCAATTGACTCTTTTAAAATAAAATTTTTTGTATATTCTTGTTTTATGTTAAACTTTTGTGCAGGGCTGTTACAATCCACTAATGGTGTTTAATTATTTTATTGTCCATCTGTATTCACTGTGTTATCAAATAAATTTGTATCCCTTAAATTAATGGGCTTTGTGAATTCTTAGGGCAAAAACTGAATTTCCCACTGTGCAGGTCAATATAGGGTAAATTTATTTAGCATATTAGCATACAGGACAATGATGCATCTTCCAATATATTATCAAAGGAAAGAAAGTATTCACTAATGTAGTTTTTAAAAGCACAAATTTGAAAATAAAAAGAGGCTATATTGCGCCACTAGGATATGATGAACCTGGCTGGGACAAGTAGCCTCTTGGGTGGAAGCCTCTGTCATAACTGTCAGTTTTTATAGAATATGCAAGAAATATTTATTTGTTATCATATTTAATGATTTTTTTAAAGGTGTCATTAATGTAAAATGTATGCATTTTGAAAAGTTAGTTTAACAATTGACA
>TU204543
CTAATCGTCTTCAGTAATAACAGCCTTAGACAATCATCAAAACCTTAAACACAATGAAGATTGCAGCAGTTATTGTTTTTCTAGTCTGTCTGCTTGCTACAGATGTACAAGGGCAGAACCAGATTCACAAAGGCAGGTGCTTCTGTGCTGACAAAGGAGTGGATGTGGTTTTACGGAAGAACATTGAGAAGTTTGAAATCATCCCTCAAAGTCCTTCTTGTGGAAAACAAGAGATTATTGTCACTTTGAAGAGTGCAGAGAGGAAATGCTTGAATCCAGAATCTAAATTCACCCAGAATTTAATCAAGCGGGCTCTTGAAAAGATGGCCCAGCAGTAGGAGATGCTCAGTGTGAATCTGGATTAGCTGCTGTGTTACGCCACTGAAGAACATCCTGATACCCATCAAACGCTGTATGACCTCTAGATGACAGTTATCACATTTGACTAGAGAACATCTGTATAAACTGTTTAGTAGTGTAAATATTTGCTTGTTAACTTATGCAATTGACTCTTTTAAAATAAAATTTTTTGTATATTCTTGTTTTATGTTAAACTTTTGTGCAGGGCTGTTACAATCCACTAATGGTGTTTAATTATTTTATTGTCCATCTGTATTCACTGTGTTATCAAATAAATTTGTATCCCTTAAATTAATGGGCTTTGTGAATTCTTAGGGCAAAAACTGAATTTCCCACTGTGCAGGTCAATATAGGGTAAATTTATTTAGCATATTAGCATACAGGACAATGATGCATCTTCCAATATATTATCAAAGGAAAGAAAGTATTCACTAATGTAGTTTTTAAAAGCACAAATTTGAAAATAAAAAGAGGCTATATTGCGCCACTAGGATATGATGAACCTGGCTGGGACAAGTAGCCTCTTGGGTGGAAGCCTCTGTCATAACTGTCAGTTTTTATAGAATATGCAAGAAATATTTATTTGTTATCATATTTAATGATTTTTTTAAAGGTGTCATTAATGTAAAATGTATGCATTTTGAAAAGTTAGTTTAACAATTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204545 True 788 lncRNA 0.36 2 4070588 4071572
TU204543 False 788 lncRNA 0.35 2 4070588 4071572

Neighbor

gene id symbol gene type direction distance location
CI01000039_04058417_04059141 NA coding upstream 2525 4058343 ~ 4059526 (+)
CI01000039_04048342_04049635 NA coding upstream 12065 4048079 ~ 4049972 (+)
CI01000039_04017602_04018203 GRSF1 coding upstream 43560 4017602 ~ 4018468 (+)
CI01000039_04011515_04015116 GRSF1 coding upstream 46912 4011449 ~ 4015116 (+)
CI01000039_03932128_03934945 NA coding upstream 126093 3931527 ~ 3935935 (+)
CI01000039_04078795_04079273 NA coding downstream 7223 4078745 ~ 4079273 (+)
CI01000039_04108687_04120437 FLOT2A, FLT2, FLOT2B, FLOT2 coding downstream 37115 4108687 ~ 4120437 (+)
CI01000039_04198172_04200073 FAM222BA coding downstream 125674 4197246 ~ 4200160 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L coding downstream 152316 4223868 ~ 4224657 (+)
CI01000039_04244908_04247540 CENPV coding downstream 172932 4244504 ~ 4247540 (+)
G180111 NA non-coding upstream 86328 3975058 ~ 3975700 (+)
G180109 NA non-coding upstream 87883 3973909 ~ 3974145 (+)
G180108 NA non-coding upstream 90364 3971459 ~ 3971664 (+)
G180107 NA non-coding upstream 94022 3967683 ~ 3968006 (+)
G180106 NA non-coding upstream 96103 3965654 ~ 3965925 (+)
G180155 NA non-coding downstream 17399 4088971 ~ 4089226 (+)
G180156 NA non-coding downstream 19530 4090998 ~ 4091608 (+)
G180157 NA non-coding downstream 20916 4092488 ~ 4092835 (+)
G180160 NA non-coding downstream 53976 4125548 ~ 4125931 (+)
G180185 NA non-coding downstream 57682 4129254 ~ 4129494 (+)
G179903 NA other upstream 636473 3424037 ~ 3425555 (+)
G179798 NA other upstream 929844 3129572 ~ 3132184 (+)
G179528 NA other upstream 1563409 2497674 ~ 2498619 (+)
G178423 NA other upstream 3076276 966676 ~ 982406 (+)
G180149 NA other downstream 3304 4079419 ~ 4079563 (+)
CI01000039_04829464_04847182 ZFR other downstream 772610 4829413 ~ 4848563 (+)
CI01000039_07324920_07329407 NA other downstream 3249112 7324596 ~ 7329472 (+)

Expression


Co-expression Network