G180155


Basic Information

Item Value
gene id G180155
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4088971 ~ 4089226 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204557
TCTGATTCCAGGTGAGCCAGTGCCCAGAGGGAAAATCTATTCCCTCTCCATCCCGGAGGAGAAGGCCATGGAGGACTACATCACTGAAGCTCTATCCCAAGGCTACATTCGTCCGTCTACTTCCCCCGCTGCTTCCAGCTTCTTTTTTGTGGCGAAGAAGGACAGAGGCTTGAGGCCCTGCATTGATTATAGAGCTTTAAATAAAATCTCTGTCAAATTCAGATACCCACTTCCTCTCGTCCCATCAGCGCTGGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU204557 True 256 lncRNA 0.50 1 4088971 4089226

Neighbor

gene id symbol gene type direction distance location
CI01000039_04078795_04079273 NA coding upstream 9698 4078745 ~ 4079273 (+)
CI01000039_04070151_04075216 NA coding upstream 13610 4070098 ~ 4075361 (+)
CI01000039_04065787_04066284 NA coding upstream 22340 4065669 ~ 4066653 (+)
CI01000039_04062068_04062375 NA coding upstream 26033 4062003 ~ 4062961 (+)
CI01000039_04058417_04059141 NA coding upstream 29468 4058343 ~ 4059526 (+)
CI01000039_04108687_04120437 FLOT2A, FLT2, FLOT2B, FLOT2 coding downstream 19461 4108687 ~ 4120437 (+)
CI01000039_04198172_04200073 FAM222BA coding downstream 108020 4197246 ~ 4200160 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L coding downstream 134662 4223868 ~ 4224657 (+)
CI01000039_04244908_04247540 CENPV coding downstream 155278 4244504 ~ 4247540 (+)
CI01000039_04295776_04307914 NCOR1 coding downstream 206550 4295776 ~ 4307914 (+)
G180146 NA non-coding upstream 17399 4070588 ~ 4071572 (+)
G180111 NA non-coding upstream 113271 3975058 ~ 3975700 (+)
G180109 NA non-coding upstream 114826 3973909 ~ 3974145 (+)
G180108 NA non-coding upstream 117307 3971459 ~ 3971664 (+)
G180156 NA non-coding downstream 1876 4090998 ~ 4091608 (+)
G180157 NA non-coding downstream 3262 4092488 ~ 4092835 (+)
G180160 NA non-coding downstream 36322 4125548 ~ 4125931 (+)
G180185 NA non-coding downstream 40028 4129254 ~ 4129494 (+)
G180188 NA non-coding downstream 44535 4133761 ~ 4134014 (+)
G180149 NA other upstream 9408 4079419 ~ 4079563 (+)
CI01000039_04048342_04049635 NA other upstream 38999 4048079 ~ 4049972 (+)
G179903 NA other upstream 663416 3424037 ~ 3425555 (+)
G179798 NA other upstream 956787 3129572 ~ 3132184 (+)
G179528 NA other upstream 1590352 2497674 ~ 2498619 (+)
CI01000039_04829464_04847182 ZFR other downstream 754956 4829413 ~ 4848563 (+)
CI01000039_07324920_07329407 NA other downstream 3231458 7324596 ~ 7329472 (+)
CI01000039_07898330_07904918 DPF2 other downstream 3806650 7896773 ~ 7905162 (+)

Expression


Co-expression Network