Gene
RNA
| Item | Value |
|---|---|
| gene id | G182721 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000039 |
| NCBI id | null |
| chromosome length | 8355537 |
| location | 6393604 ~ 6393840 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU207504 | True | 237 | lncRNA | 0.41 | 1 | 6393604 | 6393840 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000039_06361313_06381595 | MAP1B | coding | downstream | 11947 | 6360806 ~ 6381657 (-) |
| CI01000039_06347202_06354469 | NA | coding | downstream | 39135 | 6347024 ~ 6354469 (-) |
| CI01000039_06322466_06325312 | NA | coding | downstream | 68292 | 6321123 ~ 6325312 (-) |
| CI01000039_06254464_06256853 | MOGAT3B, MOGAT3 | coding | downstream | 136751 | 6254418 ~ 6256853 (-) |
| CI01000039_06240103_06241511 | NA | coding | downstream | 151813 | 6239599 ~ 6241791 (-) |
| CI01000039_06444483_06468488 | TTC33 | coding | upstream | 48524 | 6442364 ~ 6468488 (-) |
| CI01000039_06507869_06512333 | NA | coding | upstream | 113918 | 6507758 ~ 6512333 (-) |
| CI01000039_06561801_06580642 | NA | coding | upstream | 166517 | 6560357 ~ 6580763 (-) |
| CI01000039_06647926_06651530 | NA | coding | upstream | 252870 | 6646544 ~ 6653449 (-) |
| CI01000039_06702521_06707733 | NA | coding | upstream | 307766 | 6701606 ~ 6707733 (-) |
| G182712 | NA | non-coding | downstream | 7940 | 6385349 ~ 6385664 (-) |
| G182710 | NA | non-coding | downstream | 9742 | 6383234 ~ 6383862 (-) |
| G182695 | NA | non-coding | downstream | 66762 | 6326631 ~ 6326842 (-) |
| G182669 | NA | non-coding | downstream | 157945 | 6235126 ~ 6235659 (-) |
| CI01000039_06199595_06200036 | NA | non-coding | downstream | 193430 | 6197567 ~ 6200319 (-) |
| G182729 | NA | non-coding | upstream | 5639 | 6399479 ~ 6399715 (-) |
| G182745 | NA | non-coding | upstream | 22532 | 6416372 ~ 6417070 (-) |
| G182746 | NA | non-coding | upstream | 23705 | 6417545 ~ 6417793 (-) |
| G182747 | NA | non-coding | upstream | 26280 | 6420120 ~ 6420442 (-) |
| G182748 | NA | non-coding | upstream | 26974 | 6420814 ~ 6421042 (-) |
| G182470 | NA | other | downstream | 756840 | 5636058 ~ 5636764 (-) |
| G182384 | NA | other | downstream | 924316 | 5456491 ~ 5469288 (-) |
| CI01000039_04478095_04490812 | NA | other | downstream | 1902545 | 4478095 ~ 4491059 (-) |
| G180953 | NA | other | downstream | 2004075 | 4384866 ~ 4389529 (-) |
| CI01000039_04240525_04242132 | RPS27A, UBB, UBC | other | downstream | 2151200 | 4240357 ~ 4242404 (-) |
| G182771 | NA | other | upstream | 114115 | 6507955 ~ 6508433 (-) |
| G182827 | NA | other | upstream | 240707 | 6634547 ~ 6635200 (-) |
| CI01000039_07134422_07137732 | NA | other | upstream | 740267 | 7134422 ~ 7137767 (-) |
| G183261 | NA | other | upstream | 1578276 | 7972116 ~ 7975045 (-) |
