Gene
RNA
| Item | Value |
|---|---|
| gene id | G182998 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000039 |
| NCBI id | null |
| chromosome length | 8355537 |
| location | 7360936 ~ 7362149 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU207808 | True | 1214 | lncRNA | 0.39 | 1 | 7360936 | 7362149 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000039_07320926_07323244 | CKM, CKM.S, CKMA, CKM2 | coding | downstream | 36283 | 7320717 ~ 7324653 (-) |
| CI01000039_07165860_07166458 | RHOG, RHOGC | coding | downstream | 194478 | 7164783 ~ 7166458 (-) |
| CI01000039_07141149_07162368 | TAF1 | coding | downstream | 198568 | 7140963 ~ 7162368 (-) |
| CI01000039_07134422_07137732 | NA | coding | downstream | 223204 | 7134422 ~ 7137767 (-) |
| CI01000039_07006878_07015672 | NA | coding | downstream | 344663 | 7006309 ~ 7016273 (-) |
| CI01000039_07385848_07389331 | KPTN | coding | upstream | 22680 | 7384829 ~ 7390490 (-) |
| CI01000039_07401817_07402410 | H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 | coding | upstream | 38422 | 7400571 ~ 7402639 (-) |
| CI01000039_07450597_07454594 | NA | coding | upstream | 87659 | 7449808 ~ 7454630 (-) |
| CI01000039_07498583_07505779 | NA | coding | upstream | 136354 | 7498503 ~ 7506602 (-) |
| CI01000039_07523213_07573865 | LRCH2 | coding | upstream | 161048 | 7523197 ~ 7576151 (-) |
| G182997 | NA | non-coding | downstream | 4116 | 7354970 ~ 7356820 (-) |
| G183106 | NA | non-coding | downstream | 12195 | 7348437 ~ 7348741 (-) |
| G183103 | NA | non-coding | downstream | 17971 | 7342676 ~ 7342965 (-) |
| G183100 | NA | non-coding | downstream | 24809 | 7335638 ~ 7336127 (-) |
| G183091 | NA | non-coding | downstream | 52199 | 7295665 ~ 7308737 (-) |
| G183121 | NA | non-coding | upstream | 64875 | 7427024 ~ 7428641 (-) |
| G183135 | NA | non-coding | upstream | 100972 | 7463121 ~ 7465190 (-) |
| G183140 | NA | non-coding | upstream | 119484 | 7481633 ~ 7481993 (-) |
| G183142 | NA | non-coding | upstream | 122428 | 7484577 ~ 7484808 (-) |
| G183143 | NA | non-coding | upstream | 122970 | 7485119 ~ 7485485 (-) |
| CI01000039_06647926_06651530 | NA | other | downstream | 712360 | 6646544 ~ 6653449 (-) |
| G182827 | NA | other | downstream | 725736 | 6634547 ~ 6635200 (-) |
| G182771 | NA | other | downstream | 852503 | 6507955 ~ 6508433 (-) |
| G182470 | NA | other | downstream | 1724172 | 5636058 ~ 5636764 (-) |
| G183261 | NA | other | upstream | 609967 | 7972116 ~ 7975045 (-) |
