G181962


Basic Information

Item Value
gene id G181962
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7400581 ~ 7402300 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU206658
CCAGAATATGAGAAATTTGGAAAATACAAAGATCAGCTTATTTAAATTTCTGAATAAGAAAAATAAAAGAAGCACAAACATGAGGTTACATTGTGTATCACAAAGAGAGGGAAGGAGCAAAGTTCTACCCAAACAAAGTGAAAGACTCAGAACTAGAGTACTAAACGTAAAGATTATTATTTGCTACACTCTGTGACTCTAATGCCGATCTTTAATTTGACAAAACTGGAATTGAAAGAGTGGAAAACGACAGAAAAAGAGGGAGAAAAACAAAGAAGAGAAGGGAGATCAGGATGTTAGTTGAACAGTGTGGTTGAATGAGAGGCTGGTTTAGAGCGCCCCCCTGTGGCTGCCTGAAGTTATAACAGGAGGAGCAGGATCGGCTTTCAATACAATATGAAAAAGAAAAAAGAAAACAAATTCAAACTGATTCTCGGCGGATTAATCTTTTTTTTCCCTAAAGAACAATTCATGTATGCATTGTAAAAAAAAAAAAAAAGACACCATATTAACAATAATAGTAATCATCAATATTACAAGTAACAACTTTTTAACCAATAGATGCTGGTTTGCAGTTGAATACGACTCTGCTTTGCTGATCACATCACCCACAGACACTCACAGATAGAAGAAGTCTGGCTGCACACTCACCTCCACTATGAAGGGCAAGTAAGGATTCAAAAAGGACATGTAAGGACTGGATGGATCAGGAAGGGGCGGGGCAAACCGAGTGGGATTAAAACAAAGTTGGGGTTCTGAAGGGGATTGGCAAGGACAGGTTTGAGGAAGGTGGACTGAGGCAGTTTTAGTAGCACCCTGCTGTGGAAGTTTCCGCTCCCCTTAAGCAGACTGACCCCAGACACCACCCTGTTTTTCTCTCTGGACAGTGGAGTAAGTGTGAGCGCAGGGTGAGACGACTTCTCCTTACACGCATGTTGAATGTTTAGCCCTAAACCGGGCATAAGTGGACCTCGTTTACGCTCCAAATGTGAATGTGTGAGAGTATGTGTTTGTGTGTTTATACACGTGCGTGTGTGTGTGTGTTTGTGTGTGTGTGATCAGCAGCACCTGTTACATGCACATATAGGTACCCTACGCGTAATTTAGACAGCACTAGCAGACTGAGACAAAGTTACTCCCCATCACTGATACTCTAAACTCTATCAAGAAAAGCAGGAGGAGAACAAGTGGAGAGACAGAAAGAAATAAAGAGGGCGATAGAAAGAAGGGGAGCGTTTAAGCGCGCTCTCCACGGATGCGGCGTGCCAGCTGGATGTCTTTGGGCATGATGGTGACACGCTTGGCATGGATGGCACACAGGTTAGTGTCCTCAAACAGACCGACCAGGTATGCCTCACTGGCCTCCTGCAAGAATACACACAAAATCCGTCCGTTAATTAAAAAAGTTCAACATAAGGAATAAATTACAAGAAAACGCAAGACCAGGTAACAGGCTATACACACCTGCAGTGCACCAATGGCGGCGCTCTGGAAACGCAGGTCAGTTTTGAAGTCCTGGGCAATCTCTCGAACCAGGCGCTGGAACGGCAGCTTACGGATCAGCAGCTCAGTGGACTTCTGATACCGACGAATCTCACGCAAAGCCACAGTACCGGGCTGTAGCGATGAGGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206658 True 1635 lncRNA 0.44 2 7400581 7402300

Neighbor

gene id symbol gene type direction distance location
CI01000039_07394034_07396192 CRX coding upstream 4322 7392793 ~ 7396259 (+)
CI01000039_07362633_07380267 HNRPL coding upstream 20082 7362232 ~ 7380499 (+)
CI01000039_07332093_07361302 SLC8A2A coding upstream 39255 7329603 ~ 7361326 (+)
CI01000039_07324920_07329407 NA coding upstream 71109 7324596 ~ 7329472 (+)
CI01000039_07299805_07316808 MARK4A coding upstream 82606 7299805 ~ 7317975 (+)
CI01000039_07412923_07415375 NA coding downstream 10421 7412721 ~ 7415525 (+)
CI01000039_07425682_07427826 GJD1A coding downstream 23382 7425682 ~ 7427957 (+)
CI01000039_07442137_07446489 NA coding downstream 39292 7441592 ~ 7447160 (+)
CI01000039_07460749_07461491 TPPP3, TPPP2 coding downstream 58297 7460597 ~ 7462025 (+)
CI01000039_07463037_07464915 NA coding downstream 60737 7463037 ~ 7465201 (+)
G182014 NA non-coding upstream 184 7400166 ~ 7400397 (+)
G182004 NA non-coding upstream 16272 7383566 ~ 7384309 (+)
G182000 NA non-coding upstream 50376 7349972 ~ 7350205 (+)
G181999 NA non-coding upstream 53379 7346805 ~ 7347202 (+)
G181998 NA non-coding upstream 53814 7346505 ~ 7346767 (+)
G182067 NA non-coding downstream 79338 7481638 ~ 7482002 (+)
G182063 NA non-coding downstream 82795 7485095 ~ 7485424 (+)
G182054 NA non-coding downstream 107292 7509592 ~ 7511146 (+)
G182051 NA non-coding downstream 112996 7515296 ~ 7515637 (+)
G182048 NA non-coding downstream 116726 7519026 ~ 7526562 (+)
CI01000039_04829464_04847182 ZFR other upstream 2552018 4829413 ~ 4848563 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other upstream 3175924 4223868 ~ 4224657 (+)
G180156 NA other upstream 3308973 4090998 ~ 4091608 (+)
G180149 NA other upstream 3321018 4079419 ~ 4079563 (+)
CI01000039_07898330_07904918 DPF2 other downstream 493576 7896773 ~ 7905162 (+)

Expression


Co-expression Network