G182054


Basic Information

Item Value
gene id G182054
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7509592 ~ 7511146 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU206762
ATTGTTTTTAAATGGAAAGAGTTAAAGTACAATTAATTTCAAGTATAAAAAATTAATACCTAAATAGGAACATAGTAGTATACTGAAAGGTGGTCTCAGTAGAATTTCAAATACACTGTTTGGAAGTTAGTTGGGCCAACACCAACAACAAACGTCTAACCAATCTGTCTAGGAGACAGAACGAGCAAGAGGGAGATTTGAAAATAATAAGAAAAAAAACTGCAGAACGAGAGATGGGACACAACACAAAAAAAGCTCAAAAGAATATCACTGGAATGAAGGTTTATTTCTGGGCAAGCGCTTTAGGACCGCGTTTATATTAGAAAAGCTTTCCAGCGCTGGAGAGAGCTAAGTGGGAAGGCCTGAAAACAGACTTGGAGGCTGCTTTGATTCCTTCTTATGTGAGTAACACTGGGTTTAGATTGTCTGGAGCTGCTGTGCTGTTGGCGACTAACAACGAACGCTTTGTATTTACTCTTGTGTACTGTGCGTTCATTCTTTGTGCTTCCTTGTTGTTCGTTCATCAACTGCGCTTTATTTTTCGTGAAGCATTTTGTTGCGCGTGTCAGCTGTGATAAACAGACATCCACTCTCACTGTGTGTGTAACAGTGGTCAGATAGTGAGAGTTTTGCAGTTAAACAACTGCACACTGACAACCGTTAGAGAATGTGGTGTTTAGTGTCATTGATCGTGCATTTGCCTCGCGTGCCAGCGGCGATCGGGCCGGGGTTCGGGACTGACTCGGAGCAGGAGGTTGGGATTGGAGTGTGAGTTTTGGAGGCGAAGCAATGAAGAGAGGGGTGGGTTTTTTTGGGTTGATTTCAAATATCAGCGTTGTTAAAAATCTACTTACCGCACCTTTAAAGTGCAAAAATAATATATAAATAGTAAACTATAATGGTCACTTAAAGAAAACTTACAGGTATACTTGCAGTATAAAACTACTAGTAGTTGAGAGTATACTTCAAAGTGTACTTTCATAAAATAAATGTGCAACAAGTATTTGACAAGTTAACAGTAAACCTATAAGTTCACTTGTAGCACAGTTGCAGTACAAAAAAAAACAAAAAAACAACTTAGTTGTAAACTAGTTGTGTACTCAAAGTTTACTACTGTTACACTTAAAAGTATACTGTTACCCACTAAAAAGTGGGCCAATTTAGTCCAAGCAGTATTGAAACTGTAAGGGAGGTTAGATTTTAGGAAATGTCTGCAGCAGCGGCGTCTATAAGAGTCCAGTAACACAATATCATATGACCACTTTAATCGCCCACTGAAGCAGGTAGAGCAAAGATAAGCAGAGAGGACATCATGTGAATATGGGAGGGTAGTGATGTTACATATGACACTGAAGCTCATAGGCGTGGGAAGTGGGACAGTAAATTTTTCACAGGACAGTTAATGCAACGCAAATTTTTGCTCAGTTACGTTTATTCATTTTTATCATTTAATAATTTGTTTGTAATAAACACTTTAAATGGGCTATAAAAATGTTGTTGTTGTGTTTTTTTTTTTAAGAACAACTAAGATCTAATAAAAACGCTTTACAGGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206762 True 1555 lncRNA 0.38 1 7509592 7511146

Neighbor

gene id symbol gene type direction distance location
CI01000039_07474049_07478088 TAGL, TAGLN2, TAGL2, TAGLN coding upstream 30986 7473751 ~ 7478606 (+)
CI01000039_07469638_07472925 NA coding upstream 36596 7468923 ~ 7472996 (+)
CI01000039_07463037_07464915 NA coding upstream 44391 7463037 ~ 7465201 (+)
CI01000039_07460749_07461491 TPPP3, TPPP2 coding upstream 47567 7460597 ~ 7462025 (+)
CI01000039_07442137_07446489 NA coding upstream 62432 7441592 ~ 7447160 (+)
CI01000039_07512584_07512877 NA coding downstream 1333 7512479 ~ 7512984 (+)
CI01000039_07604862_07616660 NA coding downstream 93716 7604862 ~ 7616660 (+)
CI01000039_07673393_07690390 KLHL13 coding downstream 162247 7673393 ~ 7691259 (+)
CI01000039_07702176_07705973 NA coding downstream 191030 7702176 ~ 7706101 (+)
CI01000039_07723565_07724142 NA coding downstream 212419 7723565 ~ 7724756 (+)
G182063 NA non-coding upstream 24168 7485095 ~ 7485424 (+)
G182067 NA non-coding upstream 27590 7481638 ~ 7482002 (+)
G181962 NA non-coding upstream 107292 7400581 ~ 7402300 (+)
G182014 NA non-coding upstream 109195 7400166 ~ 7400397 (+)
G182004 NA non-coding upstream 125283 7383566 ~ 7384309 (+)
G182051 NA non-coding downstream 4150 7515296 ~ 7515637 (+)
G182048 NA non-coding downstream 7880 7519026 ~ 7526562 (+)
G182091 NA non-coding downstream 30165 7541311 ~ 7572931 (+)
G182141 NA non-coding downstream 267482 7778628 ~ 7778831 (+)
G182055 NA non-coding downstream 408579 7919725 ~ 7922591 (+)
CI01000039_07324920_07329407 NA other upstream 184895 7324596 ~ 7329472 (+)
CI01000039_04829464_04847182 ZFR other upstream 2661029 4829413 ~ 4848563 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other upstream 3284935 4223868 ~ 4224657 (+)
G180156 NA other upstream 3417984 4090998 ~ 4091608 (+)
G180149 NA other upstream 3430029 4079419 ~ 4079563 (+)
CI01000039_07898330_07904918 DPF2 other downstream 384730 7896773 ~ 7905162 (+)

Expression


Co-expression Network