Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_000092 |
| gene name | cacna1hb |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 8304904 ~ 8404005 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cacna1hb | Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in childhood absence epilepsy and primary hyperaldosteronism. Orthologous to human CACNA1H (calcium voltage-gated channel subunit alpha1 H). |
| id | name | namespace |
|---|---|---|
| GO:0019228 | neuronal action potential | biological_process |
| GO:0070509 | calcium ion import | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0086010 | membrane depolarization during action potential | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0045956 | positive regulation of calcium ion-dependent exocytosis | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0001518 | voltage-gated sodium channel complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| GO:0005248 | voltage-gated sodium channel activity | molecular_function |
| GO:0005261 | cation channel activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| GO:0008332 | low voltage-gated calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090312-128 | Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in childhood absence epilepsy and primary hyperaldosteronism. Orthologous to human CACNA1H (calcium voltage-gated channel subunit alpha1 H). |
| ensembl_id | ENSDARG00000099708 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00000180 | False | 4788 | mRNA | 0.49 | 33 | 8304904 | 8398249 |
| TCONS_00000181 | True | 5045 | mRNA | 0.50 | 27 | 8314826 | 8404005 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_000091 | SLC5A10 | coding | upstream | 141737 | 8110562 ~ 8163167 (+) |
| XLOC_000090 | CR855320.2 | coding | upstream | 315590 | 7988052 ~ 7989314 (+) |
| XLOC_000089 | CR855320.1 | coding | upstream | 343208 | 7956030 ~ 7961696 (+) |
| XLOC_000088 | en1b | coding | upstream | 621532 | 7679328 ~ 7683372 (+) |
| XLOC_000087 | NA | coding | upstream | 630675 | 7672121 ~ 7674229 (+) |
| XLOC_000093 | myo15ab | coding | downstream | 38066 | 8442071 ~ 8507230 (+) |
| XLOC_000094 | alkbh5 | coding | downstream | 104748 | 8508753 ~ 8516595 (+) |
| XLOC_000095 | mief2 | coding | downstream | 117318 | 8521323 ~ 8532009 (+) |
| XLOC_000096 | smcr8b | coding | downstream | 130693 | 8534698 ~ 8540050 (+) |
| XLOC_000097 | NA | coding | downstream | 169772 | 8573777 ~ 8575057 (+) |
| XLOC_000084 | NA | non-coding | upstream | 792142 | 7512529 ~ 7512762 (+) |
| XLOC_000082 | CABZ01075319.1 | non-coding | upstream | 1188990 | 7092273 ~ 7115914 (+) |
| XLOC_000081 | CU929161.1 | non-coding | upstream | 1240961 | 7063837 ~ 7063943 (+) |
| XLOC_000080 | NA | non-coding | upstream | 1314877 | 6956913 ~ 6990027 (+) |
| XLOC_000098 | AL928650.2 | non-coding | downstream | 171302 | 8575307 ~ 8577274 (+) |
| XLOC_000100 | NA | non-coding | downstream | 183225 | 8587230 ~ 8590636 (+) |
| XLOC_000105 | NA | non-coding | downstream | 546869 | 8950874 ~ 8965939 (+) |
| XLOC_000106 | NA | non-coding | downstream | 563474 | 8967479 ~ 8976422 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00018502 | cacna1h,LOC108430011 | coding | CM030135.1 | CM030135.1 | 12836224 ~ 12878881 (+) |
