CI01000040_00347516_00350540


Basic Information

Item Value
gene id CI01000040_00347516_00350540
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 347516 ~ 350601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_00347516_00350540.mRNA
ATGTCATGCACAGGATAAACACTGGAGCTGCTAGGCCAGTACGCCAAGGGGAAGAGGAGAGGCATCTCAAAGATATGCTGGAAGCAGGAATCATTACACCTTCTTCCTCAGAGTGGGTGTCACCTGTGGTGTTACTCCGTAAAAAGGATGGTGGAGTCTGCTGCCCTCTCCCCTTCCCCCCGCCTCACCTGCCACCACTCATCGCCATCCTCATCCTCCTGTGCAGACTTCTCTCCCTTTTACTGGCTGGGCGTTACCATCATTTTTTAACTCTGTTTATGCTCCCTGAGGTCTTATCAGACAATGTCTAGCCTGACATCCTGTCTAGCCTTTGCTTCTGTTTGTTTTGCCCCTTGTATTCTTGTTTTCCCA

Function

NR:

description
PREDICTED: retroviral-like aspartic protease 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_00347516_00350540.mRNA True 372 mRNA 0.50 2 347516 350601

Neighbor

gene id symbol gene type direction distance location
CI01000040_00240852_00305487 GABRB2 coding upstream 42029 240849 ~ 313275 (+)
CI01000040_00178642_00181455 NA coding upstream 165325 178604 ~ 182404 (+)
CI01000040_00366809_00384965 NA coding downstream 16108 366709 ~ 385259 (+)
CI01000040_00512880_00513451 NA coding downstream 162279 512880 ~ 513597 (+)
CI01000040_00554753_00561571 NA coding downstream 204152 554753 ~ 562993 (+)
CI01000040_00643738_00689792 STK32B, STK32A coding downstream 293137 643738 ~ 689918 (+)
CI01000040_00839831_00841736 NA coding downstream 489230 839831 ~ 841736 (+)
G183465 NA non-coding upstream 602 346374 ~ 346914 (+)
G183459 NA non-coding upstream 10483 336819 ~ 337033 (+)
G183456 NA non-coding upstream 14871 332419 ~ 332645 (+)
G183421 NA non-coding upstream 94154 201052 ~ 253362 (+)
G183603 NA non-coding downstream 6832 357433 ~ 357675 (+)
G183628 NA non-coding downstream 29520 380121 ~ 380449 (+)
G183630 NA non-coding downstream 30007 380608 ~ 397139 (+)
G183649 NA non-coding downstream 48432 399033 ~ 399304 (+)
G183650 NA non-coding downstream 49061 399662 ~ 399893 (+)
G183420 NA other upstream 182594 157543 ~ 164922 (+)
G183366 NA other upstream 287119 53691 ~ 60397 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other downstream 623512 977184 ~ 978163 (+)
G184003 NA other downstream 879691 1230292 ~ 1236489 (+)
G185296 NA other downstream 2982977 3333578 ~ 3333983 (+)
G185884 NA other downstream 3388386 3738987 ~ 3739281 (+)
G185947 NA other downstream 3623164 3973765 ~ 3974123 (+)

Expression


Co-expression Network