CI01000040_00413047_00426023


Basic Information

Item Value
gene id CI01000040_00413047_00426023
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 413005 ~ 427064 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_00413047_00426023.mRNA
AGCTATTTATCATATATAATAGTTATATAGCCATAAAAAATATACAGCGGATAAAATAAGTATTGCATACGTTAACTTTTTTTTTTTTTTTTATTAAACACTGTTCCAATGCAGCAATTCACATAACATTTTGAGCAGACATCGACATTAACTTAAGAAATCTACACAAACAAAAAAATCATAATTTTACAACCCATAAAAAAAGCTTTGTGTACTAAAGGGAAATGACTCAGGAAGAAAGTATTGAATGCAATGACAGCTTCAAGGCACATCCTGTATGACCAAACTTTAAATCTTGAATATTCTGGGAGATTCTAACAACTTTATTTTCTTCTTCTGGAACCAATTCAAACTCTCCTTTGCAGTGTGTTTTGGATTGTTGTCCTGGTGGAAGGTCCACCAAAGTCTCATCTTCATCATCCTGGTAGATAGCAACAAATTCATCTCAAGAATTCCCAGTACATGGCTCCATTCATCTTGCCTTCAATATTTTTGATTCTGCCAGTACCATGAGAAGAGAAACCGCACCATACCATGATGCTTCCACCTCGAAAACATCACTGTTAATGTGGTATTTTTTTAGGATCATATGCAAAGCCATTTCTCCTTCAAACATGGCATGTGGTATTGTTGCCAAAAGTTTGATTTTTGTCTCATCTGCCCATACTAAATTCTCCCAGTAGTTCAGACCTTTCCAAATGTTATGTAGAAAACTTCAGCATGCCTTTTCTTCAATAATGGAGCTTTCTGTGGTGAGCGTGCATGGAGACTGTGGCGGTGGAGTGCATTTCCTGTTGTTTTCTCTGTGACAACTGTACCTGCTGCCTCCAAGTCTTTCTGGACCTCTTTCTGAGTGGTCTTTAGTTCTTGGGCTACTCTTCTGTCTAACCTTCTGACTCCCTGATCAGAAATCTTGCGAGGAGCTCCTTTGCATGGCCAGTTGATGGTGGAATGATGTTCCTTTCAGTTGTGGAAAATGGCCCCAGTGGTGTTTACAGGAACATTTAAGAGTTGGAAAATCCTTCTGTAACCAGTACTGTTATGTATGGCAAAAATCTTGTTGTGAAAGTCTTGGGAGAGCTCTTTGCCTCTACCCATCATGAGATGTCCAATACTTGCATTCAGAGGTGGCTCACTCAGATTGCTCTGGAAGAGTATGTGAACTGCAAACCTGAGGTCTCTTCGCAAATTTGCTGTAGAGTTCAAGCCTGGGCCAATAGGCTGCGTGGCTCAGGGATGTTTACAGGTCTTGAAGCCCCTCCAGTATTGTTCCTGGTGTGTGTTTTGTCTGGTTGCCATGCTGAAGATGAGCTCATCCTAGTTTGTATGTGTGCTGCATGGTCCTTAAAGAACTTCTCTGTATTTGGCTTGTTTTTCGTTCTGGGGACCCGAGATGACAAGACAAGAAGGTATCTTTCTTTTTTTGGTCATGACTGTGAGGAAAAAGAAGCTGTCATCTCTGACAATGCTTCAAATCAGCCTTCCACCGCTGAAGCCCCTGCATCTGTTCTGCTCTTGATCTTCTACCAATTTTTGGATTGTGGGTGTTATGGTCTTATGTTGTGGCAGGAGAGAACAGTGGGACTAGAGTTCACCTGGGAGACATCTGGTAAAGAAGTTGTTTCTGAGTCTGGTTGTGCTAGGGCTGACTTCTCATCGCTGGTGATCAGTCAGACCACTATTACATTATCTGCGAATTTGATGATCGAGTTAGTATGGAGCACCACATGTGACATCCTGGAAGAAGAGAGAGAGAGAGGGAAAAAGAGATATCATGGTGATGGTGTGTCCGTTGGGAGCCAATGTCCACTGCTGAAGATGGGGCTGACTATCGAATTCACTCATAAAAATCATAAACATTACCCATATGGGACTGTGCACTGGAAATGAAAGAGGCGACAACCATAACATTCATTTAAGCTTTCAAATAAA
>TU208583
GCTTCCACCTCGAAAACATCACTGTTAATGTGGTATTTTTTTAGGATCATATGCAAAGCCATTTCTCCTTCAAACATGGCATGTGGTATTGTTGCCAAAAGTTTGATTTTTGTCTCATCTGCCCATACTAAATTCTCCCAGTAGTTCAGACCTTTCCAAATGTTATGTAGAAAACTTCAGCATGCCTTTTCTTCAATAATGGAGCTTTCTGTGGTG

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_00413047_00426023.mRNA False 1932 mRNA 0.41 6 413005 427064
TU208583 True 216 lncRNA 0.38 1 426310 426525

Neighbor

gene id symbol gene type direction distance location
CI01000040_00153873_00173202 GABRA6B, GABRA6 coding downstream 239803 153873 ~ 173202 (-)
CI01000040_00081665_00111856 GABRA1 coding downstream 300811 80979 ~ 112194 (-)
CI01000040_00002763_00060396 GABRG2 coding downstream 352609 2763 ~ 60396 (-)
CI01000040_00569008_00598590 STK10 coding upstream 141696 568760 ~ 598590 (-)
CI01000040_00623449_00625433 NA coding upstream 196359 623423 ~ 626036 (-)
CI01000040_00626750_00628543 NA coding upstream 199417 625832 ~ 628694 (-)
CI01000040_00701332_00746419 DPYSL3, DPYSL3.S, DPYL3 coding upstream 273769 700833 ~ 746964 (-)
CI01000040_00760116_00779888 JAKMIP2 coding upstream 333052 760116 ~ 780882 (-)
G183641 NA non-coding downstream 15808 380596 ~ 397197 (-)
G183598 NA non-coding downstream 66066 344332 ~ 346939 (-)
G183508 NA non-coding downstream 99653 197416 ~ 313352 (-)
G183502 NA non-coding downstream 221487 191161 ~ 191518 (-)
G183500 NA non-coding downstream 224345 188416 ~ 188660 (-)
G183684 NA non-coding upstream 1611 428675 ~ 428891 (-)
G183711 NA non-coding upstream 27414 454478 ~ 454794 (-)
G183722 NA non-coding upstream 48854 475918 ~ 476251 (-)
G183725 NA non-coding upstream 53091 480155 ~ 480376 (-)
G183726 NA non-coding upstream 53391 480455 ~ 480657 (-)
G183474 NA other downstream 362279 46627 ~ 50726 (-)
G183972 NA other upstream 406076 833140 ~ 833541 (-)
CI01000040_02595281_02596387 FGF1B other upstream 2168182 2594895 ~ 2596728 (-)
G185593 NA other upstream 2565124 2992188 ~ 2992683 (-)
G185681 NA other upstream 2917411 3344475 ~ 3344880 (-)

Expression


Co-expression Network