CI01000040_01002406_01015284


Basic Information

Item Value
gene id CI01000040_01002406_01015284
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1000722 ~ 1015284 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01002406_01015284.mRNA
GTTTCTTTACCCTCACACAGTGTGTCCCTCAGTATGTCTTTGTGAATGAATCCAAGACTTGGGCAGAAGCTCAGAGATACTGTAGGGAGAAATACACTGATCTGGCCACCATTGAAAATAGTCAACAGACGGTCCAGTTGATTGACAAAGTGAATGATGATTCCATTGATTTGGCTTGGATTGGACTCCTTGATGATCTGAGCACTTGGAAATGGACTCTAGAGGACAGTGGTTTCTTCAAGGAAGGAGAAAAAGACTTCAGGAACTGGTTTAACTCTGTACCAAGTATTAATGGAGATGAGTGTGTGTATATGGTCAAAGGGATATGGAAAACAGCAGGCTGTGTCAATAAAATACATCATGTTTGCTATGATGGAAGAGAAAATGCCAGTGATACTTATGTATTTGTTAACCCGTCAAAAACCTGGGCTGAAGCTCAGAGTTACTGCAGAAAATATCACACAGACCTCGTCAGTATCAGGAATGAGACTGAACAACAGAAGATTCAGTATTTATTACGGAATTATGATAGTTTCAATGTTTGGATTGGACTGTACAAAACTAGATCTTGGTCAGATCACAGCAACTCTTCATTCAGGAACTGGAGAAGCGGACAGCCAGATAAAGCAGGATCCTGCGCTGTAGTCTCATTTAGTGACTCTGGGAGATGGACAGATGAAAACTGCAATTATGCTTTTCCTTTCTTTTGCTATAGTGCATTGGCATCATCCCGGGAGTATCACTTTGTGAATGAGTCTAAGACCTGGACTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAACAAACAGGTTGATTAACACAGTTAATGGGAGTTACAGTGGCTCAGCCTGGATTGGTCTGTATGATGATGTGAACAACTATAGATGGTCATTGGAGGATAATGACTTTTATCAGGAGGGAGAGAGAGATTTCAGAAACTTTTATCATGAGCCAGACAATGAAGGGGGGAACCAGCTGTGTGTTTACATGCATCCTGAAGGAAACTGGTATGATATGTCATGTGATTACATACTGCCATTTGTTTGCTACGATGGTAGAGAGAATGCCACAAAGACTTACATCAGAATCAGTGATGAGAAAACCTGGTCAGAGGCTCGTAGATACTGCAGAGATCATTACACAGATCTCGCCAATGTGAGAAATCAGACAGAGAACCAGAGGATCCTTGAGATGGCACGGGGATATGCCTGGATTGGACTGTACAGAAACAGGGTTTGGTCAAACAATCAGATGACCAGTTATCAAAACTGGAGGCCGCAAATTCCTGTGTTACAGGCGCAACCAGATAATAGAAATACTCAACCTTATGAATATCCATATCAGCCCTGCACTGCAGTATCATTCAAATATTCAGGCCGATGGACAGATGAGGCCTGTGAATCCAGCATGCCTTTCTTCTGCTACAGCAGAACCTGCACACAATCTTCATGTACCCGCCAGTATCACTTTGTATCTGAGTCTAAGACCTGGACTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAAAAGACTCATTAAAACAGTACGTGGCACTTACTATGGCTCAGCTTGGATCGGTCTGTATGAAGATCTGAACAGCTGGAAATGGTCTCTGGAGAATGCAACATTAGAGGGAGGTTTTACAAGCTGGTATGTCCAGCACCCAGTGAACTCAGGTGGAAAGAGTCTGTGTGTGTACATGAGAAAAGAACAGGGAACATGGAGTGAAATCCCTTGCTACCAGTCTTTAAGTACATTCGTTTGCTATGATGGAAGAGTGAACGCTAGTAAGAGTTATGTGTTAATTTACAAGCTCACAACCTGGACTCAAGCTCAGAGTTACTGCAGAGAATATCACACAGACCTTGTCAGTATCAGAAATATGACTGAAAACCACAAGATTCATGTATTACTTTCAAATAATTACGGTGTTTGGATTGGACTGTACAGAACCAGATCTTGGTCAGATCAGAGCAACTCTTCATTCAGTAACTGGAGGACAGGACAGCCAGATAATGCTGGAAACAGTGAATACTGCACTGCAGTGTCATTTAGTGACTCTGGGAGCTGGACAGATGAAAACTGTAATACTTCTTTACCTTTCATTTGCTACAGCGCATTAGCTTCATCCCGGGAGTATCACTTTGTGAATGAGTCTAAGACCTGGACTGAAGCTCAGAGATACTGCAGACAGAATTACACTGATCTGGCCACCATTGATAACATGGAGGAAATGAACAGGTCGATTAACACAGTTAATGGGAGTTACAGTGGCTCAGCCTGGATTGGTCTGTATGATGATGTGAACAGCTGGAGATGGTCATTTGAGGATAATGACTTTTATCAGGATGGAGAGAGAGATTTCAGAAACTTTTATCATGAGCCAGACAACATTGAGGGGAATCAGCTGTGTGTTTACATGGAGAATGGAAACTGGTATGATGCGCCATGTGAAAATTTGTACTCATTTGTCTGTTATGATGGTAGAGAAAATGCCTCTCAGAAGTATGTTTTGCTATCTAAGCAATGGACCTGGCCTGAAGCTCAGAGATACTGCAGAGAGATGTACACAGACCTGGCCAGTGTGAGAGATGAGACAGAGCGCCAACAGATACTGAGCATTATACGTGGTGGTTATACTGTATGGATTGGTCTGCATAGAAACAGACTGTGGTCAGATCAGAGCAGCTCTTCCTTCACATATTGGCTGCCATATACTTACTATGTTGATGCACAACCAGATAATGGTGCATATGTCCCAGGAGAGCAGGGAATTCAGCACTGCACAGCTGTGTCTTTAAAATACTTAGGCCAGTGGACAGATGAAAGATGCTTTGCCAGTTTGCCTTTCTTCTGTTACAGTGTGATGGGAATGCGAGTAAAAGTTACAAGTCTAGAAAATTTGTCAAAGTCTCAGATTGAAGCGCTTGTCATTATACAGTTAAAAGAAGAGCTGATCAAGCTCGGACTTCCCAACAACATCACCACGCATTTGAGAGACTATCGTCTGCTCAATCCCTGATGTAGGAGGAAAGCGCTTTGTAGTTTCTAATAATACACTTGTGGGCTCAATACTTAATACTTAAAACTTAATCAAGCATTATACTATAATCTATAAAGACTTTTACAAATGAATGATCCAGATTTTGTTTTTCCAATATGTTATGTCATTGACATGTGTTGTTTAACAGACCAAGTAAATCAGTGAAGGGGGTTATATAAAAATACTAACAATGAATGTAGCTTGATTTTCATTGTCAGAATGATGGAAAATTATAACATACAGTACAGTACAATGTACTCGTTATGCAGATTTTTTACATTAATGTGATATGATTTAAATATGATCTATGTAAGATAATGATTTTGTTAAATTTTGCATAATATGGTACTAAATGTGTCAGTAAAGTTACTTAAAGTTTGAAACTTTGTGGTTGTTTTATGGGACTTAAGGATTAGTAGTAGAACCAAAGGAATGAAAACCTGATTATTTTAATTGTCATCCTGGCATCTTCTTTTCCTCAGTTTTACATAAGGTTAATAGTTTGATCTAATCCCTCTGCTTTGCACAAACAGTGCTCAGTGTAAATGAGTACACCCCCTTTGAAAAGTAACATTTTAAACAATATCTCAATGAACACAAAAACAATTTCCAAAATGCTGACAAGACTAAGTTTAATATAACATCTGTTTAACTTATAACATGAAAGTAAGGTTAATAATATAACTTAGATTACACATTTTTCAGTTTAACCCAAATTAGGGTGATGCAAAAATGAGTACACCCCACAAGAAATACTACAACATCCAGTAGTTTGTAAGGCCTTCATGATTTTTAATGACAGCACCAAGTCTTCTAGGCATGGAAGTTGGCGACATTTTGCAACATCTTTTTCCATTCTTCAAGAATGACCTCTTTTAGAGACTGGATGCTGGATGGAGAGTGATGCTCAACTTGTCTCTTCAGAATTCCCCATAGGTGTTCGATCGGGTTCAGATCAGGAGCCACTGAATCACTTTCACCCTGTTCTTCTTCAGAAATCCAACAGTGGCCTTAGATGTTTGTTTAGGATCATTGTCATGTTGGAAAAGTGCACGACGACCAAGGGCACGGAGTGATGGTAGCATCTTCTCTTTCAGTATAGAGCAGTTCATCTGTGAATTCATGATGCCATCAATGAAATGCAGCTCCCCGACACCAGCAGCACTCATGCAGCCCCACATAAGGACACTGCCACCACCATGTTTCACTGGAGGCACCATGCATTTTTCTTTGTATTCCTCACCTTTGCGACGCCATACAGTTTTGAAGCCATCAGTTCCAAAAACATTTATCTTGGTCTCATCACTCCTGAGTATAGAGTCCCAGTAGTCTTCATCTTTGTCAGCATAGGCCCTGGCAAACTCTAGGCGGGCTTTTTTGTGCCTGGGCTTTAGAAGAGGCTTCTTTCGTGGACGGCACCCATGCATGCCATTCCTCTGCAGTGTACGCCATATTGTGTCATGGGAAATAGTCACCCCAGTTTGGCTTTCTACTTCTTTAGATAACTACAGATTAGGGTTAGGGTTAGGGTTACAGATCCCACCAGAAAACATCGGTTTTGTTTGGTATCCGAAATTATCAACAAAGTTTTGTCTGATACCCAAAACCAGTTAACAGCAAGTTTTGTCTGATAATTAAAAAACTAAAAAAATCAGTTAATAAA

Function

NR:

description
Retinoic acid receptor beta, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01002406_01015284.mRNA True 4773 mRNA 0.41 10 1000722 1015284

Neighbor

gene id symbol gene type direction distance location
CI01000040_00961941_00973627 IK coding downstream 27095 961941 ~ 973627 (-)
CI01000040_00837863_00839807 NA coding downstream 160915 837463 ~ 839807 (-)
CI01000040_00810717_00829640 P4HA2 coding downstream 171082 810409 ~ 829640 (-)
CI01000040_00795062_00809762 NA coding downstream 190960 794937 ~ 809762 (-)
CI01000040_00760116_00779888 JAKMIP2 coding downstream 219840 760116 ~ 780882 (-)
CI01000040_01134768_01140438 SRA1 coding upstream 119135 1134419 ~ 1141116 (-)
CI01000040_01150384_01152552 SRA1 coding upstream 134751 1150035 ~ 1152552 (-)
CI01000040_01160713_01185710 HSPA4A, HSPA4 coding upstream 144791 1160075 ~ 1186329 (-)
CI01000040_01287654_01288940 NA coding upstream 272361 1287645 ~ 1290193 (-)
CI01000040_01315704_01327557 NA coding upstream 299891 1315175 ~ 1327606 (-)
G184460 NA non-coding downstream 14500 985862 ~ 986222 (-)
G184445 NA non-coding downstream 46049 933428 ~ 954673 (-)
G184436 NA non-coding downstream 89711 908093 ~ 911011 (-)
G184430 NA non-coding downstream 103583 888626 ~ 897139 (-)
G184428 NA non-coding downstream 118949 881513 ~ 881773 (-)
G184497 NA non-coding upstream 113253 1128537 ~ 1148282 (-)
G184506 NA non-coding upstream 238907 1254191 ~ 1254738 (-)
G184573 NA non-coding upstream 266692 1281976 ~ 1284791 (-)
G184587 NA non-coding upstream 297629 1312913 ~ 1313434 (-)
G184651 NA non-coding upstream 547643 1562927 ~ 1582846 (-)
G183972 NA other downstream 167181 833140 ~ 833541 (-)
G183474 NA other downstream 949996 46627 ~ 50726 (-)
CI01000040_02595281_02596387 FGF1B other upstream 1579962 2594895 ~ 2596728 (-)
G185593 NA other upstream 1976904 2992188 ~ 2992683 (-)
G185681 NA other upstream 2329191 3344475 ~ 3344880 (-)
G187207 NA other upstream 4248909 5264193 ~ 5286918 (-)
G187348 NA other upstream 4547371 5562655 ~ 5565553 (-)

Expression


Co-expression Network