CI01000040_01036304_01041594 (CDX1B)


Basic Information

Item Value
gene id CI01000040_01036304_01041594
gene name CDX1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1035474 ~ 1041769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01036304_01041594.mRNA
GTATAAATTGGAAGTTATTAAGACAGTGACAAAGTCGTATTACGGCATGGTATTTTGGTCACTATATTTACAGTTCATGTCATTAAATCATAAAATGTTAATTTACCTATCTGAGCTAATTTTGTACTGTAAAATGATAACACAGGTGGCAAAATGGAAGCCCACGTTATGACTTGAAGTTTATGATAATTATTTTTTACAGCAAAATAACAACACCAAACTATAACAACATAAATACACCGCAAACACTCCAATGTTATGAAAACAAAAATAAGAATAACAAAATCTAAAAATAATGATAACGCGCACAATTTTGCGAATGCCTCTTTCCCTATATTAGACAATAATTTACCTTACAAACAGCGATGATTTCTTGTTAAATATAATAGACCTATACATTTTTATCCGTAAACTCTAAATTAAAACATTTCTTACAATATTGTATAGTAGTAAATTTAGGCTACGTGTAGACCTATTGTCTCTTTAAATGCATTTAAGGTTTTTACAGTAGCATTTTTACATTTTCCTAATTACTAACATGTTTACAGTGGATAATAATGTAATAAGTATAAATTCCAAATGTCGTTCTTTCATGGGCCGCTCTGAACTGGATCATGACCAAGGGCAGTTTTGATACCGTGGGAGGGTGATCGACTCGTGATCATAAAAGTGACGTCAGCGTGGCAACCTTTAGCAGGCACCGAGGCTGAAGAGGGTTCAGAGAATCTGGCCAGGTAGACGAACCGTCAGGTTACAGGGAAACCTGGGTCTAAGGAGCCAAGATCAATTGTTTGGGTGCATATTATGCACTGGAGTCATCAGGCGGGAAGATGTATGTGAGTTATCTCTTAGAGAAGGACACCAGTATGTACCCAAATTCCGTCAGACACCCAAGTCTAAACCTGAACCAGAATTTTGTAACCGCACCTCCACAGTATCCGGACTTCACAGGATACCATCACGTCCCTGGAATTACCAACGACCCTCACCACAGCCAAACTGGAGCCTGGAACCCCGCGTACCCTCCTCCAAGAGAGGAATGGACAACTTATGGGCCAGGAACTGGAGCTTCAACCTCGAGCACTGGTCAGCTGGGCTTCAGTCCTCCAGAGTTTTCATCTGTCCAAGCGCCCGGCCTTCTTCCATCTTCATTAAACTCGTCAGTCGGTCAGCTGTCGCCGAACTCTCAGAGACGGAACCCGTACGACTGGATGCGTCGGAGCGCTCCGCCGACAAACTCAGGAGGAAAGACCAGAACAAAAGACAAATACCGGGTAGTGTACACCGACCATCAGCGTCTGGAGCTGGAGAAAGAGTTTCATTACAGTCGTTACATCACAATAAGAAGAAAGGCAGAGCTGGCGACAGCGCTCAGTCTGTCAGAGAGACAGGTGAAGATCTGGTTCCAGAACCGGCGTGCTAAAGAGAGGAAAGTCAATAAAAAGAAGATGCAACAGCCGCAGCCAGCATCCACAACCACACCCACCCCACCGGGTTCAGCTCTCCCAGGCAATGTTCCCATGGTGACAAGTAGCAGCGGTGGCCTGGTATCGCCGTCTATGCCAATGACTATCAAAGAAGAGTACTGAAGAGAGAAGGATGTGCAGACTTTGACTGTTAATATTTTTATACTATAACAGAGCCCTTTCACACTTCTACACACATGGTACTTTAAAATCAACATATCTTTGATGCAATGAAAAAGAAACTGTGACAAACGTGACAAAGACTGTCTGCTGCATGGGGTTTTATTGAAAAATACAA

Function

symbol description
cdx1b Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within several processes, including digestive tract development; endoderm formation; and liver development. Predicted to be active in nucleus. Is expressed in several structures, including blastodisc; brain; germ ring; gut; and mesoderm. Orthologous to several human genes including CDX1 (caudal type homeobox 1).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09312 CDX1_4; homeobox protein CDX1/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01036304_01041594.mRNA True 1764 mRNA 0.42 3 1035474 1041769

Neighbor

gene id symbol gene type direction distance location
CI01000040_00981074_00988746 NA coding upstream 46667 981074 ~ 988807 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 coding upstream 57963 977184 ~ 978163 (+)
CI01000040_00941839_00959939 NA coding upstream 75420 941839 ~ 960054 (+)
CI01000040_00908325_00928762 OATX coding upstream 106648 907887 ~ 928826 (+)
CI01000040_00895179_00895620 NA coding upstream 139825 895179 ~ 895649 (+)
CI01000040_01065647_01124429 CAMK2A coding downstream 23878 1065647 ~ 1124429 (+)
CI01000040_01206296_01212731 NA coding downstream 164359 1206128 ~ 1212731 (+)
CI01000040_01267267_01282224 NA coding downstream 225498 1267267 ~ 1282435 (+)
CI01000040_01296612_01311591 SEPT8, SEPT8A coding downstream 254843 1296612 ~ 1311621 (+)
CI01000040_01332036_01345122 FRMD7 coding downstream 290267 1332036 ~ 1345156 (+)
G184062 NA non-coding upstream 63900 970765 ~ 971574 (+)
G184061 NA non-coding upstream 70528 961089 ~ 964946 (+)
G184048 NA non-coding upstream 104333 888079 ~ 931141 (+)
G183981 NA non-coding upstream 193388 841742 ~ 842086 (+)
G184077 NA non-coding downstream 33874 1075643 ~ 1121547 (+)
G184086 NA non-coding downstream 92274 1134043 ~ 1150549 (+)
G184008 NA non-coding downstream 102413 1144182 ~ 1160977 (+)
G184005 NA non-coding downstream 121073 1162842 ~ 1180537 (+)
G184022 NA non-coding downstream 288190 1329959 ~ 1351377 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 758619 240849 ~ 313275 (+)
G183420 NA other upstream 870552 157543 ~ 164922 (+)
G183366 NA other upstream 975077 53691 ~ 60397 (+)
G184003 NA other downstream 188523 1230292 ~ 1236489 (+)
G185296 NA other downstream 2291809 3333578 ~ 3333983 (+)
G185884 NA other downstream 2697218 3738987 ~ 3739281 (+)
G185947 NA other downstream 2931996 3973765 ~ 3974123 (+)
G187510 NA other downstream 4927276 5969045 ~ 5971732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019867 cdx1b coding NC_007132.7 CM002905.2 43976075 ~ 43992027 (-)