CI01000040_01150384_01152552 (SRA1)


Basic Information

Item Value
gene id CI01000040_01150384_01152552
gene name SRA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1150035 ~ 1152552 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01150384_01152552.mRNA
GTAATCAGGAGCATGGATGGAACGACCCACCGCAGTTTTCCTATGGCTTGCAGAAGGATACAGGTGGACCGAAGCGGAATATTCTCAACAAGAGGGTTCATGCACCCCAACTTGCAGGTTCAGGATCAGAGATGCAATCCACACCAGTGGCGAGGGTGACACCTCCCCGGGGAATAATTCCTCCTCCGATGGACAGCGTCACTCCACCTTCCATGTGTCCAAGAATTCCTTCAGATGGAACGGCAGAGGCGGTAGAGCCGGAGACAGAGCCGTGCATTGAAGATGTGCAAGAACCTCTGTATTGGGCGTTGAATGCATGTAGACATACTGTGAAGAAACAGATCTGTGATGATGTAGAAAGACGTCTGAAGCTTTTTGAGGACATGTGGAAAAGTGGGAAACTCTCTCCTTTAGTTAAACATAGGATGCATGGATTGTCCCAAGACCTGAAAAGAAGAAACTGGGATGCAGCTGATGAGATCCACAGAGGCCTCATGGTCGACCATGTTTCTGAAGTCAGTCAGTGGATGGTGGGAGTCAAGCGTCTCATCGCTGAAGCTCGGAGCCTGAACCCAGAACAGATCAACAACTGCACTGATCCAGGGTCTTGAGGACTGTATGATATCCAGTACTTCTCTGAAAACTCATGAATTCATTGGACAAGTTGCCGAAGTGATTTGTCTTAACTTATGTAAAGTTTTGTATTATCCATCTTTAAAAAAAACTGCCCATTAGTATCTAGTTCATCTAATATTACTTCTATTTTTGTAGGGTGGTGCTGGGGAACAGTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTCATCATAAATTTGCTTTGTATTTTGAGAAAAATTGAAAATGTAGGTAAATGAAAAGTATTTTACTACTATATATAAAAATCTGCTTTTAAAAAAAGGCTGATTGGCAACTATTCCAGCCCGAATAAA

Function

symbol description
sra1 Predicted to enable nuclear receptor coactivator activity. Acts upstream of or within heart contraction. Predicted to be active in nucleus. Orthologous to human SRA1 (steroid receptor RNA activator 1).

GO:

id name namespace
GO:2000273 positive regulation of signaling receptor activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01150384_01152552.mRNA True 960 mRNA 0.43 4 1150035 1152552

Neighbor

gene id symbol gene type direction distance location
CI01000040_01134768_01140438 SRA1 coding downstream 8919 1134419 ~ 1141116 (-)
CI01000040_01002406_01015284 NA coding downstream 134751 1000722 ~ 1015284 (-)
CI01000040_00961941_00973627 IK coding downstream 176408 961941 ~ 973627 (-)
CI01000040_00837863_00839807 NA coding downstream 310228 837463 ~ 839807 (-)
CI01000040_00810717_00829640 P4HA2 coding downstream 320395 810409 ~ 829640 (-)
CI01000040_01160713_01185710 HSPA4A, HSPA4 coding upstream 7523 1160075 ~ 1186329 (-)
CI01000040_01287654_01288940 NA coding upstream 135093 1287645 ~ 1290193 (-)
CI01000040_01315704_01327557 NA coding upstream 162623 1315175 ~ 1327606 (-)
CI01000040_01354920_01371380 STK26 coding upstream 202299 1354851 ~ 1371380 (-)
CI01000040_01384014_01394577 T185L, TMEM185A, TMEM185A.L, TMEM185, TMEM185B coding upstream 230821 1383373 ~ 1394577 (-)
G184497 NA non-coding downstream 1753 1128537 ~ 1148282 (-)
G184460 NA non-coding downstream 163813 985862 ~ 986222 (-)
G184445 NA non-coding downstream 195362 933428 ~ 954673 (-)
G184436 NA non-coding downstream 239024 908093 ~ 911011 (-)
G184430 NA non-coding downstream 252896 888626 ~ 897139 (-)
G184506 NA non-coding upstream 101639 1254191 ~ 1254738 (-)
G184573 NA non-coding upstream 129424 1281976 ~ 1284791 (-)
G184587 NA non-coding upstream 160361 1312913 ~ 1313434 (-)
G184651 NA non-coding upstream 410375 1562927 ~ 1582846 (-)
G184658 NA non-coding upstream 428903 1581455 ~ 1581991 (-)
G183972 NA other downstream 316494 833140 ~ 833541 (-)
G183474 NA other downstream 1099309 46627 ~ 50726 (-)
CI01000040_02595281_02596387 FGF1B other upstream 1442694 2594895 ~ 2596728 (-)
G185593 NA other upstream 1839636 2992188 ~ 2992683 (-)
G185681 NA other upstream 2191923 3344475 ~ 3344880 (-)
G187207 NA other upstream 4111641 5264193 ~ 5286918 (-)
G187348 NA other upstream 4410103 5562655 ~ 5565553 (-)

Expression


Co-expression Network