CI01000040_01332036_01345122 (FRMD7)


Basic Information

Item Value
gene id CI01000040_01332036_01345122
gene name FRMD7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1332036 ~ 1345156 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01332036_01345122.mRNA
CTTTATTTGAGCTGCTCTGCTCAGGCGGATCTGTGTCTGTAGATGAAGGACGTGATGCTGTAGTTCATCCTCATCCATTTGTCATAAGAGAGGACCATAGGCACAAAATCATATCATGGCATCAGAAAAACGATGTGAAATTGTCTGCTGATGTTTTTAGGGTGTCAGTTCATGACGGCGACATGAGCTGCAGAAGAAAACAACCTGATCTCTTCAACTCAGAAAACACAGGAAAGCCACAGAAAGACAGTTTGTTCGCTCTTCGAGTCGTCTTTCTGGATGATAGTGAGCATGTTTTTGAGATGGAGCAAAGGGTGCTGGGAAAGGATTTCTTCAACGCAGTATGTGGACACCTTAAACTTGTTGAAAAGGAATACTTTGGGCTCGAATTTCGACATCATTGTGGCAGTTTTGTTTGGCTGGAACTGCTTAAGCCTCTTGCAAAACAAATTAAAAAAAGAAATGGTGTGACCTTCCGCTTCATAGTGAAGTTTTTCCCACCAGACCCAGGACAACTGCAGAGAGAGCTGACCAGGTATCTGTTCGCACTGCAGATCAAACAGGATCTGTCCAATGGCAGTCTGACCTGTAACGATAACAGTGCTGCTTTACTGGTTTCCTATCTTCTCCAGGCAGAGATCGGGGACTATGTTGAAGAGCTGGACAAGCAGCATTTGGAAAACAAGAGGTACATCCCAAACCAGGACTGCCTCCACAGAAAGATCACACGCTTCCATAAGAGACACAGAGGTCAATCCCCAGCTGAAGCGGACAGTCAGCTGCTCGAGGTCGCCCGTAAACTGGACATGTACGGTATCCGACCTCACACAGCCAGCGATGGAGAAGACATGAGGATCAATCTGGCTGTCACTCATTCTGGAGTGCTGGTTTTCCAGGGAAATACCAAAATAAATTCTTTCAGCTGGGCCAATATTCGTAAACTCAGCTTCAAGAGAAAACACTTTTTGATAAAACTTCATGCACCGATTGTGGCGTCCTGTAAGGACACCGTAGAATTTGCCATGGCCAGTCGTGACGTTTGTAAGGCCTTCTGGAAGATGTGTGTGGAGTACCATGCCTTCTTCCGTCTGTCTGAAGAACCGAAGGGCAAACAAAAATCACTCCTCTACAGCAGGGGATCTTGCTTTAGATACAGAAGGTACTGTAGAGACTACTATAATGACCGACAATGTAGATCCTCGCCTGACCTGCTGACTGATGTTTCCAAGCAGGCATACGAGCAGTCGTGTGGTTTTCCTCATGCGGGCTGTGCTCCAGGCGGGAAGCGGAGTCAGTCGGCCGTGGAGGTTCTTGTCTCGTCCGAGTTCGAGGATTCTCAGGCGTCTTCCCTTCAGCCATTCCACTCGGAGGCAGACGCAGGGCCTGATGTACAGCGGGTGCACAGGAGCGACCGGAGAGCCCGGTGCAGATGCTGCGCTTCACAGCGCGACCGTCCCAACAGACGGCAGCTGGTGCTGCTTTACCCAAACCACCCTCACACCTGCCTGCACCTTCATCCGGTACCACTGGTGCCGGTGTGTCCGCTGAGCGCCTCGTTTGCTCTGGATCACGCTTGTGCTCCAGTCCTGCTGCCGTGCTGCAGTCACACCGCTCATCAGCCATCGCCCGTGTGCTTTCTAGACGACGCTGTGCGCTCTTCCAGCTTCTCCGGATCCTCGTATGGCTCCCCGGCCCTTATAAACTGGCAGCAGTATTCCGGCGTCGGTTGGTCTACGGTGCTTGGAGCAGCGCCAGGCTTTTACTTAGCGGGTAGCTTTGGAGACAGAGATTGCAAAGACTTTGACAGGGAAGAGTTAGGCCACTTCAGCGACGACTGCAGCTACCAAACGGGACTTCCTCGCCGCTCGTACAGCCAGTCTGACATGAAGCTGTTATGTGAGCCTGCCGAGTTTCGACCACTGGGTCACTATCCTCACCTTTCACGACGGCAAGGCCTCTCACGGCCTACGTACCTGCCGCTGCACTCGTCTCTCCTGCCGGAGCGACCGACAGAAGGAAGCCGGTCAGAACTGAGTCACAGTGACTCGGACTCGGACGCTGTATGTTCGTCCTACTGCCCCGGGCTCAGCCGACTGGTGCGGTCTGGGCCTCTGGCACGCATGCGCATTTCCTCCGGTAGCTTACAGCTGGATGAAGAGGAACATTTGTCTAGTAATGAAGAAGGTACAGCCTCTGCATCAGCTGTCAAAGCTAAACACAAGTCCTGAGATACACAGGGAACATGGATGACTGTGTACTACA

Function

symbol description
frmd7 Predicted to enable cytoskeletal protein binding activity. Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital nystagmus 1. Orthologous to human FRMD7 (FERM domain containing 7).

NR:

description
Zgc:153674

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01332036_01345122.mRNA True 2262 mRNA 0.52 12 1332036 1345156

Neighbor

gene id symbol gene type direction distance location
CI01000040_01296612_01311591 SEPT8, SEPT8A coding upstream 20415 1296612 ~ 1311621 (+)
CI01000040_01267267_01282224 NA coding upstream 49601 1267267 ~ 1282435 (+)
CI01000040_01206296_01212731 NA coding upstream 119305 1206128 ~ 1212731 (+)
CI01000040_01065647_01124429 CAMK2A coding upstream 207607 1065647 ~ 1124429 (+)
CI01000040_01036304_01041594 CDX1B coding upstream 290267 1035474 ~ 1041769 (+)
CI01000040_01399805_01411103 ATG4A coding downstream 54649 1399805 ~ 1411675 (+)
CI01000040_01454703_01458555 GPR185A coding downstream 109547 1454703 ~ 1459283 (+)
CI01000040_01490929_01498480 NA coding downstream 145738 1490894 ~ 1498497 (+)
CI01000040_01535182_01539109 NA coding downstream 189944 1535100 ~ 1539460 (+)
CI01000040_01539717_01540595 NA coding downstream 194434 1539590 ~ 1540649 (+)
G184005 NA non-coding upstream 151499 1162842 ~ 1180537 (+)
G184008 NA non-coding upstream 171059 1144182 ~ 1160977 (+)
G184086 NA non-coding upstream 181487 1134043 ~ 1150549 (+)
G184077 NA non-coding upstream 210489 1075643 ~ 1121547 (+)
G184062 NA non-coding upstream 360462 970765 ~ 971574 (+)
G184009 NA non-coding downstream 3710 1348866 ~ 1388236 (+)
G184112 NA non-coding downstream 27016 1372172 ~ 1393542 (+)
G184117 NA non-coding downstream 79942 1425098 ~ 1425502 (+)
G184124 NA non-coding downstream 91784 1436940 ~ 1437293 (+)
G184127 NA non-coding downstream 95403 1440559 ~ 1440781 (+)
G184003 NA other upstream 95547 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 353873 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1055181 240849 ~ 313275 (+)
G183420 NA other upstream 1167114 157543 ~ 164922 (+)
G183366 NA other upstream 1271639 53691 ~ 60397 (+)
G185296 NA other downstream 1988422 3333578 ~ 3333983 (+)
G185884 NA other downstream 2393831 3738987 ~ 3739281 (+)
G185947 NA other downstream 2628609 3973765 ~ 3974123 (+)
G187510 NA other downstream 4623889 5969045 ~ 5971732 (+)
G188149 NA other downstream 5463535 6808691 ~ 6809130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019182 frmd7 coding NC_007132.7 CM002905.2 43400351 ~ 43416128 (+)
bowfin (Amia calva) AMCG00021212 NA coding CM030130.1 CM030130.1 9324264 ~ 9339692 (+)