CI01000040_01535182_01539109


Basic Information

Item Value
gene id CI01000040_01535182_01539109
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1535100 ~ 1539460 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01535182_01539109.mRNA
GTATAAATAGGTCCCTGTTTTAGTCAGCGTTTGTCGGTTATTGTTTGAGTTTCTCAACGTATGTTTGTTGTGTTATTTCGTCATGGTGGTCATGCCTTGCCTGGATTTATGTTTGGTCTGCCTTGGATTATTCACTGCTTTGCTTGGACTCATGTCATGCCTGTTTGTGGATTACTGTGCACATCAGGAGCAGCTCACGGCGCTGGGTGGATGGGCCCTACTGGCCGACAAACAAGGAGAAGCCGAATTTGGAACGATCGGTCAGGAGAGCTCTCGCAGCATCCAATGTTCGCAGCATTGGATGGAAGACCAATGCTCTAGGAGACCAATGCTCTGGGAGACCAATGCTCCAGGAGACCAATGCTCTGGGACACCAATGCTCTGGGAGACCAAAGCTCTGGGAAACCAATGCTCAGGGAGACCAATGCTCAGGGAGACCAATGTTCTAGGAGGCCGATGCTCGTGGCATCGGACGTGTAAGCCTTGCTGGATGGAGAAAGAAAGACATGGATGGCCAATAAGGAGGCTTTGGAAGGCGTCTGAGGTCCATCTTCTGAGAGCTTGGATCTGCTGTTGGGAGAGACCTTTTTGGGCTGCCGAAGTTGCAGAAGGAGTGATTGGAGAAATTTTGTGCTGGGATGACGGACTGTTGGAGAACGGATTTGAGGTGTTTTTGGAACCAAAAGCTTGTCACAGGCCATGCAAGTCTCACAAATCTACTATCTTGGCTGTTAGATGTGACATCAATAAACGTTTGAGGGAAAACCTAGACGCACCTCATATAGACACATTTGTAGAACGGGTCTGTATACCCAGGATAGACCGGAACCGAAAAAACCCGGTGGTGTTTGAGATTATTAGAAAAACAACATGGCTTATCAGGGAAATGGTAGCTCGAGTGTAGACAGGGATATAATGGAATCTCTTGCGTTGCAAATGAAAGCTCTCCTTTTTCGTCTGCGTAACAAGGGAGTAGATTTTGATTGGAACAATGACCAAATTCTAGCCTGGTACGTTACTGAAGGCCGAAAATTGGAAACTAAATCTTCCTATCGAAAACTACTGGTCAAGATTGTTTATACGCTACGTCGAAATGATTTGGCAACTATTGCAGAAAACGAACGCATGATAGCGAACATAAAAGAGCTAGAAGCAACATGATTAGATGAGCTGAAAAAGCTCAGAGAACAGGTTGAAGCATCTGTGTATGAAAAACAAACTTGGGCAAGACAGGGCGACGCTATGGAAACGCACA

Function

NR:

description
putative tyrosine recombinase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01535182_01539109.mRNA True 1255 mRNA 0.46 6 1535100 1539460

Neighbor

gene id symbol gene type direction distance location
CI01000040_01490929_01498480 NA coding upstream 36603 1490894 ~ 1498497 (+)
CI01000040_01454703_01458555 GPR185A coding upstream 75817 1454703 ~ 1459283 (+)
CI01000040_01399805_01411103 ATG4A coding upstream 123425 1399805 ~ 1411675 (+)
CI01000040_01332036_01345122 FRMD7 coding upstream 189944 1332036 ~ 1345156 (+)
CI01000040_01296612_01311591 SEPT8, SEPT8A coding upstream 223479 1296612 ~ 1311621 (+)
CI01000040_01539717_01540595 NA coding downstream 130 1539590 ~ 1540649 (+)
CI01000040_01540821_01545220 NA coding downstream 1294 1540754 ~ 1545260 (+)
CI01000040_01553258_01557964 NA coding downstream 13798 1553258 ~ 1560167 (+)
CI01000040_01579092_01597460 TMLHE coding downstream 39552 1579012 ~ 1598480 (+)
CI01000040_01604128_01609619 DKC1, DKC1.L coding downstream 64668 1604128 ~ 1609714 (+)
G184161 NA non-coding upstream 4845 1524233 ~ 1530255 (+)
G184127 NA non-coding upstream 94319 1440559 ~ 1440781 (+)
G184124 NA non-coding upstream 97807 1436940 ~ 1437293 (+)
G184117 NA non-coding upstream 109598 1425098 ~ 1425502 (+)
G184112 NA non-coding upstream 141558 1372172 ~ 1393542 (+)
G184194 NA non-coding downstream 54849 1594309 ~ 1594820 (+)
G184198 NA non-coding downstream 61536 1600996 ~ 1601249 (+)
G184199 NA non-coding downstream 62254 1601714 ~ 1601944 (+)
G184187 NA non-coding downstream 83089 1622549 ~ 1634932 (+)
G184229 NA non-coding downstream 149996 1689456 ~ 1689667 (+)
G184003 NA other upstream 298611 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 556937 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1258245 240849 ~ 313275 (+)
G183420 NA other upstream 1370178 157543 ~ 164922 (+)
G183366 NA other upstream 1474703 53691 ~ 60397 (+)
G185296 NA other downstream 1794118 3333578 ~ 3333983 (+)
G185884 NA other downstream 2199527 3738987 ~ 3739281 (+)
G185947 NA other downstream 2434305 3973765 ~ 3974123 (+)
G187510 NA other downstream 4429585 5969045 ~ 5971732 (+)
G188149 NA other downstream 5269231 6808691 ~ 6809130 (+)

Expression


Co-expression Network