CI01000040_01540821_01545220


Basic Information

Item Value
gene id CI01000040_01540821_01545220
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1540754 ~ 1545260 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01540821_01545220.mRNA
GATTAAATGTATAGGCGATACTTTGATGACAGCAACTCAAACGCAGCCAGTCCAGCTTGATTTAGGCATGGTAGTGTTAAACGAGCCATTCTGGTATTTACCAGATAACAGCGAAGGAACTGTGTTAGGTATGGACATCATGAGAAAGCATGGCTTTGTAATTCATTGTTTTGAAAAACAAATTGAAGTACAAACTAACAAAACAGCAAAGAAATGCCTGTCTATAAGCCATGTCGGCATTATGTCCATATCCAGTACAGATCCGATTCAACTTCTCATCAACAAACACAGCAATGTTTGGGCCAATCATAAACACAACTGTGACCTCATTGACTTCGAAGTATGCATTGAGGGAGAGCCTCCTCCCCCACAAAAACAATATCGCATCAAGCCAGAGGCAGACGTCGCTGTTCATGAGATAGTAAAACAGCTTGTGTTCCAAAACCTAATGGTAAATGGCTTCTGGTCTATCAAAGTCAAACGAGAAGACCAATGGAAGCTAGCATTTACTGTAAATCAAATGCAGTACACATGGGAACGAATGCCACAGGGTCTTCACAACAGCCCAGCCATTTTTCACCGAGCTGTGGCAGATGTGCTCAGTCCCTTACTAGGGACTGGCAAAGTAGTTCACTATGTAGACGACATTCTAATAGCCACAGAAGAACCACTTGCAGCTGAAGCGATCAAGGCACACCCTGAACCGCTCTGCGTATATACGGACAGCCGTTACAAGTTTGGCATGGTAACAGACTTTATGGCTCAGTGGCAATTGCGGAACTTTCTCACGTCTGCCGGAATGCCTATAAAACATTTCAACACTATAACCGCAATTTGGCAAGCTATACAAGCGCGAGAAACCCCCATCTTCGTTGTAAAAGTGCGTGCACACATCAACAAAAATCCAGATCTGCATGAGAAAAACAATAATATTGCTGACCAATTGGCTAAGCTGGCAGCAGTGAAAGGTGACTTATGGCAAAACAAAACACCCTCTGTTTCTGTAGCAAGTGCAGCGCAAGTTACGCCCATAGACCTCAAACAGTATCAACAAGATCTGTGGGTCTCTGATGGAGAACTTGTACCACACTTGAAACATTATCAGATGGTTAACATAATCGAAGGCATAGTCATCCGAGATGGGAAATTTGTAGTTCCAGAAGGAAAGCTAGGCCAAACAAATCTGCGCAGGCCAGAACCACCTAAAGGACCCTGGGAGTCCTTACAATTGGATTTCATTGGTCCACTACCCAGTGCCAAAGGGGGGACAGTCATTGCAATTCCATGGAGGCCGGATGCCAGGGCTGTATCTGGACCCACCTGCATCAAATTGGGACAACGGGTCACACTTGCACACACCCTAAGATGCGGGAGATGGGTATGGAAATATACTAAGGGACCATCCACACCTTACATTCCAATTACATACAAAGAAATAGTCACATGGCCCCCCGGATTAGCACCGGAACCAAATTGTGTAACTAAAATCTGCTGTAAGACAGGTTCTACTCATCTCCAAGACACAAACATCACAGGTTACACACTAGCACCAAAATTTCACCATAGCGTTACTACCTGGAATCAACCTAAAGAGTACCCAGGTTCAAAAATTGGTAGCCAGAACCTACTGTATAAAATTAACAATTATGGTGAAGATCCTAAAAACTTTTACTCCATTAAGGATCTAGAACCCGCAACATATAGGCCATGCAAGTCTCACAAATCTACTGTCTTGGCTGTTAGATGTGACATCAATGTAAATACTTCTGGTGCGACTGGTAAGGTAGTTTCACTCTCACATCAATGGAACAGACAAGAATAAAGAAAACAAAACCTGTTCTCCTGGTGTGGGAGATGCCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01540821_01545220.mRNA True 1862 mRNA 0.44 6 1540754 1545260

Neighbor

gene id symbol gene type direction distance location
CI01000040_01539717_01540595 NA coding upstream 105 1539590 ~ 1540649 (+)
CI01000040_01535182_01539109 NA coding upstream 1294 1535100 ~ 1539460 (+)
CI01000040_01490929_01498480 NA coding upstream 42257 1490894 ~ 1498497 (+)
CI01000040_01454703_01458555 GPR185A coding upstream 81471 1454703 ~ 1459283 (+)
CI01000040_01399805_01411103 ATG4A coding upstream 129079 1399805 ~ 1411675 (+)
CI01000040_01553258_01557964 NA coding downstream 7998 1553258 ~ 1560167 (+)
CI01000040_01579092_01597460 TMLHE coding downstream 33752 1579012 ~ 1598480 (+)
CI01000040_01604128_01609619 DKC1, DKC1.L coding downstream 58868 1604128 ~ 1609714 (+)
CI01000040_01706518_01706939 NA coding downstream 161258 1706518 ~ 1707234 (+)
CI01000040_01707444_01725985 NA coding downstream 162021 1707281 ~ 1725985 (+)
G184161 NA non-coding upstream 10499 1524233 ~ 1530255 (+)
G184127 NA non-coding upstream 99973 1440559 ~ 1440781 (+)
G184124 NA non-coding upstream 103461 1436940 ~ 1437293 (+)
G184117 NA non-coding upstream 115252 1425098 ~ 1425502 (+)
G184112 NA non-coding upstream 147212 1372172 ~ 1393542 (+)
G184194 NA non-coding downstream 49049 1594309 ~ 1594820 (+)
G184198 NA non-coding downstream 55736 1600996 ~ 1601249 (+)
G184199 NA non-coding downstream 56454 1601714 ~ 1601944 (+)
G184187 NA non-coding downstream 77289 1622549 ~ 1634932 (+)
G184229 NA non-coding downstream 144196 1689456 ~ 1689667 (+)
G184003 NA other upstream 304265 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 562591 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1263899 240849 ~ 313275 (+)
G183420 NA other upstream 1375832 157543 ~ 164922 (+)
G183366 NA other upstream 1480357 53691 ~ 60397 (+)
G185296 NA other downstream 1788318 3333578 ~ 3333983 (+)
G185884 NA other downstream 2193727 3738987 ~ 3739281 (+)
G185947 NA other downstream 2428505 3973765 ~ 3974123 (+)
G187510 NA other downstream 4423785 5969045 ~ 5971732 (+)
G188149 NA other downstream 5263431 6808691 ~ 6809130 (+)

Expression


Co-expression Network