CI01000040_01553258_01557964


Basic Information

Item Value
gene id CI01000040_01553258_01557964
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1553258 ~ 1560167 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01553258_01557964.mRNA
AGTTTCTCAGTAATGAGGACATTGTCGGATCTCATGCTGGGCTAAATGTCAGCGCTGCAGCTCAGAGTGGAAGCCAGATTACAGCACCTGTGCTCACTAACAATACAATAACAGGCAGTGTCCAAATTATACATAATACACCTACAACAAGATCTGTGATTTTAAAATATAAGGAGCGGATCTGCAACGAGTATCAGTGTGTGAACGAGTATAACTCACTGCCTGGTGAACATGTGCTGCTGTCTGAGCGCTACACACAACCTCTGATCCTTCAGAGACATAGAGGTCGAAAAGAGAGAGAACAAGAGATCGGCTCCAGTGGAGAAAGCTTCCAGCAGGTCCTCAGCGCCAGGAGCAGTGATGACTCTGTCCATCTGAGCTCTCTGTTCAACCCAGATGGACATGGGATCCGTCCTAGTGCTGTTATACTGCAGGGAAATTCTGGGAACGGGAAATCTTTCACTGTGCAGAAGATCATGATGGACTGGGCATCTGGTGACCTCTACAAAGAGCGGTTTGATGTTGTGTTCCACCTGAAGTGTAAAGAAATAAACCGCATTTGTGGCAAAAAGAGTTTGGCGGAGATCTTGAGCTGCAGTTGTAGTTTAACATCAGATCAGATCTCACAGGTACTACAGCATTCACCAGAGAAGGTGCTCTTCATCATCGATGGATTTGATGAGCTGAGACTCACACAGGACATTAATGACATGTCACCACACACTGATCTGCTTCAGAAAGCCCCAGCTGAGGTCATTCTTTGTGACCTGCTGAGGGGTCGAATCCTGCCAGAGTCCTTCCTTCTGGTCACCTCCAGATCTACAGCCACAGATACACTGAGTAAACTGCTCAAAGGACCTCAGGGTTTCGCTGAGATTATGGGATTTTCAGAAAAGGGGGTAGAGGAGTACTTCCAGAAGTTTTTTCAAAATGAGGAACTTTTCAGGAAGGCTTACACACTTGTGAAGACAAATGAAACCCTCATCACGGCCTGTTCCATCCCTGTCATCTGCTGGATCATCTGCACAGCTATCAAGGAACGACTCAAAACTGGTGCAGATGTAACAAGTGGACTGGAAACCACCACCTCCATCTACGTTGACTTTGTGTGCACTCTCTTGAAGCATCACTGCCAGGGTTCGATTCAGTCCATCCCGACCCTGCTGAGGAGTCTGGGTCAGCTGGCAGAGAGAGGTATGCTGGAACAGCAAGTCCTGTTAGATGAGAAAAGTGTTTATGAAACAGTTTCAGACCCTGCTGGCAGTCCGTTCCTGTGCAAGTTCCTGTTTAAGAGACGAATCCACCAGGAGACGATGTTCAGTTTCATGCATCTCAGCTTTCAGGAGTTCTTCACTGCTCTGTACTATGTCCTTTTAGGTGAAAAAGAGTCCCAGAGAAAATTTACACAGCTATTTTCCATTAATAAATACTCAAGTCATTATCATTTTTGTCCTAAACATTTTTCAGCTGTGGTGCAGTTTGCATTTGGTCTGCTGAATAAGGATGTGAGATGCACACTTGAGAAACATGGACTCTTTGTTCATTCAAAAACACAGACTCATCTGAAAGAATGGATTTTGAAAATGGTTCATAATATTCACACATATTCAGTTAAAGCACTTTTTTTCCTTCACTGTCTCTATGAACTTCATGAAGAGGACTTTGTGAAAAAAGCTATGAAAACCTGGAAAAGAATTCATGCATATGATCCAATCATAAGCAGAACAGACTGCTGGGTCATGCTGTACTGCTCTCAGTGCTGTCAGTGCATAGAAGAACTGGATCTTTTTGTGTGCACGTTATCATCTGAATATTTCCGTATAATTCTGCCTGTTTATGACAAGTTTAAGAAAGTAAGCATTGATGTCCTCTTCATATTTAGAAAATTTGAGACTTGTTATCTGCAGTTGTCAATCAAAGAAGAAATCAGGTGAAGAAGTGAACTGTTTTTTTTCTGTTCATCAAATAGCTGTTTCTCATGATAACCAGACAAAGTTATGTGACGATTATATTTTTGATAACCAGTTATATCATCACCTTGTTCAATAACCATAATAGTATAATCTAGCAGTACTAGCCTTTTCCTGTCATAGTCTGTTCTGCACAATCTAATTGTAACGGAGGGGACGGGACAACAGAGTGGGAGATCCACGTGCAGGCTTTATTAAAATGAGAGTAGTCGTACAGGCAGAGGTCAAACACCAGCAAACAGATCCAAGAGGGCAAGTCAATAGAGTAATCCAAAACACAGGCTATGGTCAAGGCCGGCAGCAAACGATCCTCAAACAAAGAGGCAGGGCAGGGCGAACACGGAGACAAGGTCGAACAAAGGCTAAACAATACTCAGCAATGAGTGTGTGTGAGTGCAGCTTATAAAGGGTCACTGATGGGAAACAGGTGTGAGTGCATGATTGGTTCCTAGGTGAGGGATTGTGGGAAATGTAGTCCAGAGTGAAGTGACTGTGTGTGTGCACTGAAAAAGTCTTAATGTAGGAACAGAGACCTCTGGTGGGGAGTGGAAGGAGACAGCAGTGGGCGGAAACGTGACACTAATACAGGTGCTGGTCATATAATTAGAATATCATGAAAAAGTTCATTTTTTTATTGTAAATTATTTTAAAAAATGAAACTTTCATATATTCTAGATTCCCTACATGTAAAGTAAAACATTTCAAAAGTTTTTTTTTTTTAATTTGTTGATTAGAGCGTACAGCTAATGAAAGTCCAAAATCCAGTATCTCAAAATATTAGAATATTTACATTTGAGTTTCATTAAATGACCATCCCTACAGTATAAATTCCGGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGAAATATCAAAGCATATTAAATGCAAAGTTGACTGAAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCGATTCAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTAAAAATAATTTACAATAAAAAAATGAACTTTTTCATGATATTCTAATTATATGACCAGCACCTGTACCTTCAGATTATAATTATGGTAGTAATAATGCAGCTAAATTGATAACCCAAAAAAGATCAAACA

Function

NR:

description
cryopyrin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01553258_01557964.mRNA True 4137 mRNA 0.32 3 1553258 1560167

Neighbor

gene id symbol gene type direction distance location
CI01000040_01540821_01545220 NA coding upstream 7998 1540754 ~ 1545260 (+)
CI01000040_01539717_01540595 NA coding upstream 12609 1539590 ~ 1540649 (+)
CI01000040_01535182_01539109 NA coding upstream 13798 1535100 ~ 1539460 (+)
CI01000040_01490929_01498480 NA coding upstream 54761 1490894 ~ 1498497 (+)
CI01000040_01454703_01458555 GPR185A coding upstream 93975 1454703 ~ 1459283 (+)
CI01000040_01579092_01597460 TMLHE coding downstream 18845 1579012 ~ 1598480 (+)
CI01000040_01604128_01609619 DKC1, DKC1.L coding downstream 43961 1604128 ~ 1609714 (+)
CI01000040_01706518_01706939 NA coding downstream 146351 1706518 ~ 1707234 (+)
CI01000040_01707444_01725985 NA coding downstream 147114 1707281 ~ 1725985 (+)
CI01000040_01728828_01731709 KIF4A coding downstream 167605 1727772 ~ 1732232 (+)
G184161 NA non-coding upstream 23003 1524233 ~ 1530255 (+)
G184127 NA non-coding upstream 112477 1440559 ~ 1440781 (+)
G184124 NA non-coding upstream 115965 1436940 ~ 1437293 (+)
G184117 NA non-coding upstream 127756 1425098 ~ 1425502 (+)
G184112 NA non-coding upstream 159716 1372172 ~ 1393542 (+)
G184194 NA non-coding downstream 34142 1594309 ~ 1594820 (+)
G184198 NA non-coding downstream 40829 1600996 ~ 1601249 (+)
G184199 NA non-coding downstream 41547 1601714 ~ 1601944 (+)
G184187 NA non-coding downstream 62382 1622549 ~ 1634932 (+)
G184229 NA non-coding downstream 129289 1689456 ~ 1689667 (+)
G184003 NA other upstream 316769 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 575095 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1276403 240849 ~ 313275 (+)
G183420 NA other upstream 1388336 157543 ~ 164922 (+)
G183366 NA other upstream 1492861 53691 ~ 60397 (+)
G185296 NA other downstream 1773411 3333578 ~ 3333983 (+)
G185884 NA other downstream 2178820 3738987 ~ 3739281 (+)
G185947 NA other downstream 2413598 3973765 ~ 3974123 (+)
G187510 NA other downstream 4408878 5969045 ~ 5971732 (+)
G188149 NA other downstream 5248524 6808691 ~ 6809130 (+)

Expression


Co-expression Network