CI01000040_01604128_01609619 (DKC1, DKC1.L)


Basic Information

Item Value
gene id CI01000040_01604128_01609619
gene name DKC1, DKC1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1604128 ~ 1609714 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01604128_01609619.mRNA
ATGGCGGACATGGAAATTGGCTCAGCTAAGAAAGAGAAGAAAAGGAAGTCGCAGCAAATTTCGTCAGGAGAAGTTGGGGACATTCAAGAAAGTGGAGACTTCCTCATCAAACCTGAATCTAAGGTTGCAAGCTTGGACACATCGCAGTGGCCATTGCTGCTGAAGAATTTTGATAAGCTCAACATCAGGACAGCTCATTACACTCCTCTGCCACATGGCTCGAATCCGCTCAAGAGGAACATACATGATTATGTCAGGTCTGGATTCATTAATCTGGACAAACCTGCCAACCCCTCTTCCCATGAAGTCGTCGCTTGGATCAAGAGAATTCTTCGTGTTGAAAAAACGGGTCACAGTGGCACCCTCGACCCCAAAGTCACGGGTTGCTTGATTGTGTGTGTGGAGCGAGCCACACGACTGGTCAAATCCCAGCAGAGCGCAGGCAAAGAGTATGTGGGCATAGTACGGCTGCACAATGCACTAGAGAACGAACACCAGCTAGCGAGGGCTCTGGAGTGTTTAACAGGAGCCCTGTTCCAGAGGCCTCCACTCATCGCCGCTGTGAAGCGTCAACTGCGAGTGCGGACCATCTATGAGAGCAAGCTTATTGAATATGATCCCGAGAGAAGATTAGGTATTTTCTGGGTGAGCTGTGAAGCGGGCACATACATCCGTACACTCTGTGTCCATCTGGGTCTACTGCTGGGAGTTGGCGGTCAGATGCAAGAGCTGCGGAGAGTCCGATCTGGTGTCCTGGGTGAAAAGGTACATTGAGAACTTGTCTGCAGACCCAAAGTGTTGAGTTCAGTTCTGGGCTTTCTCCCCAGTTCTGGTAATTATTCTTTGGTACAGAAAATGGCTGAGGGGTA

Function

symbol description
dkc1 Predicted to enable pseudouridine synthase activity. Acts upstream of or within definitive hemopoiesis and rRNA processing. Predicted to be part of box H/ACA snoRNP complex. Is expressed in central nervous system; optic tectum; and proliferative region. Used to study dyskeratosis congenita. Human ortholog(s) of this gene implicated in X-linked dyskeratosis congenita; aplastic anemia; and dyskeratosis congenita. Orthologous to human DKC1 (dyskerin pseudouridine synthase 1).

GO:

id name namespace
GO:0042299 lupeol synthase activity molecular_function

KEGG:

id description
K11131 DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01604128_01609619.mRNA True 869 mRNA 0.50 8 1604128 1609714

Neighbor

gene id symbol gene type direction distance location
CI01000040_01579092_01597460 TMLHE coding upstream 5648 1579012 ~ 1598480 (+)
CI01000040_01553258_01557964 NA coding upstream 43961 1553258 ~ 1560167 (+)
CI01000040_01540821_01545220 NA coding upstream 58868 1540754 ~ 1545260 (+)
CI01000040_01539717_01540595 NA coding upstream 63479 1539590 ~ 1540649 (+)
CI01000040_01535182_01539109 NA coding upstream 64668 1535100 ~ 1539460 (+)
CI01000040_01706518_01706939 NA coding downstream 96804 1706518 ~ 1707234 (+)
CI01000040_01707444_01725985 NA coding downstream 97567 1707281 ~ 1725985 (+)
CI01000040_01728828_01731709 KIF4A coding downstream 118058 1727772 ~ 1732232 (+)
CI01000040_01760148_01802721 AMMECR1 coding downstream 150434 1760148 ~ 1803002 (+)
CI01000040_01876498_01878546 FUNDC2 coding downstream 266784 1876498 ~ 1879308 (+)
G184199 NA non-coding upstream 2184 1601714 ~ 1601944 (+)
G184198 NA non-coding upstream 2879 1600996 ~ 1601249 (+)
G184194 NA non-coding upstream 9308 1594309 ~ 1594820 (+)
G184161 NA non-coding upstream 73873 1524233 ~ 1530255 (+)
G184127 NA non-coding upstream 163347 1440559 ~ 1440781 (+)
G184187 NA non-coding downstream 12835 1622549 ~ 1634932 (+)
G184229 NA non-coding downstream 79742 1689456 ~ 1689667 (+)
G184231 NA non-coding downstream 81708 1691422 ~ 1691759 (+)
G184234 NA non-coding downstream 84088 1693802 ~ 1694200 (+)
G184235 NA non-coding downstream 85879 1695593 ~ 1695954 (+)
G184003 NA other upstream 367639 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 625965 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1327273 240849 ~ 313275 (+)
G183420 NA other upstream 1439206 157543 ~ 164922 (+)
G183366 NA other upstream 1543731 53691 ~ 60397 (+)
G185296 NA other downstream 1723864 3333578 ~ 3333983 (+)
G185884 NA other downstream 2129273 3738987 ~ 3739281 (+)
G185947 NA other downstream 2364051 3973765 ~ 3974123 (+)
G187510 NA other downstream 4359331 5969045 ~ 5971732 (+)
G188149 NA other downstream 5198977 6808691 ~ 6809130 (+)

Expression


Co-expression Network