CI01000040_01760148_01802721 (AMMECR1)


Basic Information

Item Value
gene id CI01000040_01760148_01802721
gene name AMMECR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1760148 ~ 1803002 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_01760148_01802721.mRNA
CCGCGAGCGGAACACTCGGAGAGTCCGGGGGAATCCAGTGGATTTCTGACGGAGGCCATATTATGCCGCTCGAAAATGTACCCGAATAATCGGATGACAGCACTCCGATCCATAGAAGGGAAACTTTCGAGCTCAGTTTACACGAGATATAACGTAAGCTCTTCTCGCTTATTACGTCTGTCAAAGGAAGGGAAGGTGGAGCATTGTCCGTCGTACGTGCTGACGCAGTGGGATTTCTACGTGTGGTCTGCGTTTCGACCCGCCCTTCCCGCGGTGACGGTGATGGGTCGGAAGCGGAGGCTACAACTCAACTGGCCTCTCCCCGACTCTCAGTCCCGGACCTGGCTCGGGAGGCAGGAAAATGGTCGTTTCGGCGGAGATGTGTTGCTTTTGCTTCGACGTGCTTTATTGCCATCTATACGGATACCAGCCTCCTCGAACACCCAGGTTTACAAACGACCCCTAATCATCCCTTGTGCTGAGTATAACCATGCCCTTAAAGACAGTCGCTTTCCCCCCATGACGAGGGACGAGCTGCCGCGCCTCTTCTGCTCAGTGTCTCTGCTCACCAACTTTGAAGATGTTGGTGATTACTTAGACTGGGAGGTGGGTGTTCACGGCATTAGGATAGAATTTTTTAATGAAAAAGGATCAAAGCGCACCGCCACCTACCTGCCAGAGGTTGCGAAGGAGCAAGGATGGGACCACATTCAGACCATAGATTCCTTACTTCGAAAGGGAGGTTACAAAGCTCCCATCACAAATGACTTCAGGAAGACTATTAAATTGACCAGGTACCGTAGTGAAAAGATGACAATGAGCTACGCAGAATACATCGCCCACCGCCAGCATCATCACTACCAGAATGGCATCGGGCACCCTCTCCCTCCATACAACCATTATTCCTGACAGCGAGCCGCATGACCAGTCACTGGACCTCTCTGCGGACATCTTCCCAGGAGAGCCCGCCTCCTCGTGGTCTAGCTATCTGTACTACTGTACCATTTTATGATGATAGTTTCCGTTGCCATGTCGACAGTCAGATGGAGGCATGGCAGCGGGTGCAAATAAGCATTAGGTGATTATAAAGCGAAAAAATTCATTTTGTCATTTTTATTATTTGTATTAATTTAGTTTTTGCAGCATATATATATATATATATCGACCCCTTCCTTTTTTTTTTTAAGCAA

Function

symbol description
ammecr1 Human ortholog(s) of this gene implicated in midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis. Orthologous to several human genes including AMMECR1 (AMMECR nuclear protein 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_01760148_01802721.mRNA True 1190 mRNA 0.49 8 1760148 1803002

Neighbor

gene id symbol gene type direction distance location
CI01000040_01728828_01731709 KIF4A coding upstream 27916 1727772 ~ 1732232 (+)
CI01000040_01707444_01725985 NA coding upstream 34163 1707281 ~ 1725985 (+)
CI01000040_01706518_01706939 NA coding upstream 52914 1706518 ~ 1707234 (+)
CI01000040_01604128_01609619 DKC1, DKC1.L coding upstream 150434 1604128 ~ 1609714 (+)
CI01000040_01579092_01597460 TMLHE coding upstream 161668 1579012 ~ 1598480 (+)
CI01000040_01876498_01878546 FUNDC2 coding downstream 73496 1876498 ~ 1879308 (+)
CI01000040_01882704_01887004 BRCC3 coding downstream 78791 1881793 ~ 1887135 (+)
CI01000040_02315449_02344137 GABRQ, GABRB4 coding downstream 512447 2315449 ~ 2344313 (+)
CI01000040_02444252_02460962 NA coding downstream 640559 2443561 ~ 2460962 (+)
CI01000040_02475489_02482435 NA coding downstream 672487 2475489 ~ 2482515 (+)
G184236 NA non-coding upstream 61512 1698123 ~ 1698636 (+)
G184235 NA non-coding upstream 64194 1695593 ~ 1695954 (+)
G184234 NA non-coding upstream 65948 1693802 ~ 1694200 (+)
G184231 NA non-coding upstream 68389 1691422 ~ 1691759 (+)
G184229 NA non-coding upstream 70481 1689456 ~ 1689667 (+)
G184268 NA non-coding downstream 67131 1870133 ~ 1870342 (+)
G184276 NA non-coding downstream 94230 1897232 ~ 1897596 (+)
G184295 NA non-coding downstream 143487 1946489 ~ 1946692 (+)
G184297 NA non-coding downstream 153527 1956529 ~ 1956873 (+)
G184324 NA non-coding downstream 225079 2028081 ~ 2112062 (+)
G184003 NA other upstream 523659 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 781985 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1483293 240849 ~ 313275 (+)
G183420 NA other upstream 1595226 157543 ~ 164922 (+)
G183366 NA other upstream 1699751 53691 ~ 60397 (+)
G185296 NA other downstream 1530576 3333578 ~ 3333983 (+)
G185884 NA other downstream 1935985 3738987 ~ 3739281 (+)
G185947 NA other downstream 2170763 3973765 ~ 3974123 (+)
G187510 NA other downstream 4166043 5969045 ~ 5971732 (+)
G188149 NA other downstream 5005689 6808691 ~ 6809130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019877 ammecr1 coding NC_007132.7 CM002905.2 44709280 ~ 44731865 (-)
bowfin (Amia calva) AMCG00021148 ammecr1,LOC108429437,LOC107713167,LOC107715796 coding CM030130.1 CM030130.1 7026401 ~ 7040851 (+)