CI01000040_03939728_03943493 (RNF121)


Basic Information

Item Value
gene id CI01000040_03939728_03943493
gene name RNF121
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3938308 ~ 3943624 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_03939728_03943493.mRNA
GCTTAAAAAAACAACTTAAACTTGCTATGCCTACCAGACACTAAGGCCCTGTTTACACCTGGTATTAAGATGCATTTAGTCGATTGGACAAGTGGACAATTCTAAATACAGGTGTAAACAGGGTCTAAAACATTTTGAAGAGTTGAAAACGGTACAGCTCGGTACGGAACACTTTTTGGCGCTTTTCCACTGCATGGGATGGCTCGGTACGGAACAGTATGGCTCGCTTAAATGGTACCACCTCGGTTGAGGTTCCAAGCATGCTGAACCGATACTAAATGTGACATGTAAACACTGCAGATCACTGATTGGTCAGAGAGAATCATCACGACCAGCATCATTGGATTTGAAACACAAGACACCAAACCCTCTAGATTTAAGTAGTCAGTAACAGCCACCGCAGTACCATTTGTTCGCACAATTTTTTTAAACGACTTGCTTTATACAACCGTCGCACGCAACTTGAAAAAAGAAATGGCTGTATCGTAGTCAGTAGATGAGGTGCAGACTTGTTGATAGCCGAAGAGCAGATCCACGGCAGTAAAGGCGGCGCAACTATAATGATCAGTCTATAATCCCACCCACTTTGAAGCGAGTTGTTCCACACAGTGGAAATACACCAGTAGACTCTTCAAGAAGAAAATGACGACGATGACTAACGAATACAGCAGGTGCATATGCACCTTTGGTGCTTGGCGTCTAACTACAGCAAAAAAAAAAAAAAAGCAATAACATGCATGACACATTTTTGGTCAACCAATGTGTTTGTGAAAATGTCAGAGGTCCTAGATTTAAAACTTGCTAAATGTTACCCAAATGCCATATGTTTTCTTCTGTTTTTCACTTCATGTGCACTTACAAAAAACTTAAATGTTAGGCTTCTTATGTTTATTTTTATTTATTATATTTTTAGTTTTATTTGCTTACTTCTTGTATCAGCTAGAATCAAGTTGTTTTTAGGGTTGGCCAGATAAGATCCAGTGATTTCATTGGGGTGGCATGCACAAATAAACAAACAAACAAACAAATTCCTGCTTCAAATCTAGAGAAAATCACTTGATATGCAGTCACTTAAAGGGAATCCCTGGTGTTAAGACTTGTATGGCTTAATATAACGTAAATGATGTCTCTTACTGAAATATGTAGTAGAAAACCCATGAAAGATTTACGTTATTTAAAAGATCCATCACATATTGGACCGATTTGGAAAATGGGCAGCGCCATTGTGTTTAGGTGCACAGTGCATAACGTCAAATGGTTGAGCTACTGACACTGTCCTATTGCTATTTTTATCTCAACACAACTCGGAATATAATATAAGATGCCACATTGTGCAGCTTTTGGTTGTAATTTTCAGTCGATTTACAAGTGTTCTTTTTTTTTTTTTTTTTTTTTTCCCAAGTTGGTAACCCTCTTCCAAATGTGGGTCGTTCCTCTGTACTTCACCACTAAGCTGCACTGGTGGAGGTTTCTGGTGACATGGTTCATCTTCTCTGTTGTCACGGCGTTCATCAGTTTTCGCGCTACCCGCAAACCACTGGACTGCACCACTCCGAGGCTTGTTTATAAATGGTTCCTCCTTTTGTATAAGATCAGCTACACTACGGGCATTGTGGGCTATACTGTAGTTATGTTCACCCTCTTTGGCATCAATCTTATATTTAGAATAAAGCCAGAAGATGCCATGGACTTTGGTGTGTCGCTTCTTTTTTACGGCCTGTACTATGGTGTACTCGGTCGGGATTTTGCAGAGATGTGTGCAGATTTTATGGCATCTACAGTTGGGCTCTTGGCTGTCATGCCCATATGTTATCAGCAGCAATTTACTTTTGCATCTAGCATCTCGCCCGATTGCTGTCACACCAGTTGCAAACCATTTAAAAAGCTGCTTACACTAACCAAATTGAGCCAAGCTCTGCAGTCTGCAGCAAAACCTCTGTGAAAGCATCCTTAAATTCTAGTGTTTTCAAAGTGAGGCTATAATTATTTTATTGAAATTATCATTATATTAATTTATTTCATTATTTCATTGGCTATGAATTACTTTTTCAGGACAAGCTCAACAAAATTATA

Function

symbol description
rnf121 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within several processes, including neuronal action potential; regulation of ER-associated ubiquitin-dependent protein catabolic process; and thigmotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human RNF121 (ring finger protein 121).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_03939728_03943493.mRNA True 2073 mRNA 0.39 4 3938308 3943624

Neighbor

gene id symbol gene type direction distance location
CI01000040_03789687_03800746 STC2B coding upstream 137562 3789081 ~ 3800746 (+)
CI01000040_03761247_03762668 BOD1, FA44B coding upstream 175634 3761161 ~ 3762674 (+)
CI01000040_03297317_03298657 DRD1B, DRD1 coding upstream 639412 3296455 ~ 3298896 (+)
CI01000040_03271519_03276006 NA coding upstream 662268 3271063 ~ 3276040 (+)
CI01000040_03212701_03215022 POU4F3 coding upstream 723140 3212701 ~ 3215168 (+)
CI01000040_04047210_04060876 NA coding downstream 103586 4047210 ~ 4061675 (+)
CI01000040_04063098_04068134 PPP2R2B coding downstream 119323 4062947 ~ 4068198 (+)
CI01000040_04369595_04374831 NA coding downstream 424841 4368465 ~ 4375355 (+)
CI01000040_04442810_04474877 MAP4K6 coding downstream 498173 4441797 ~ 4475124 (+)
CI01000040_04475476_04499896 NA coding downstream 531688 4475312 ~ 4500113 (+)
G185791 NA non-coding upstream 22848 3914585 ~ 3915460 (+)
G185788 NA non-coding upstream 23832 3913310 ~ 3914476 (+)
G185915 NA non-coding upstream 44621 3893485 ~ 3893687 (+)
G185914 NA non-coding upstream 44827 3893279 ~ 3893481 (+)
G185779 NA non-coding upstream 46649 3889424 ~ 3891659 (+)
G185938 NA non-coding downstream 23578 3967202 ~ 3967422 (+)
G185955 NA non-coding downstream 46056 3989680 ~ 3989921 (+)
G185959 NA non-coding downstream 65444 4009068 ~ 4009291 (+)
G186041 NA non-coding downstream 270492 4214116 ~ 4226490 (+)
G186057 NA non-coding downstream 296442 4240066 ~ 4240279 (+)
G185884 NA other upstream 199027 3738987 ~ 3739281 (+)
G185296 NA other upstream 604325 3333578 ~ 3333983 (+)
G184003 NA other upstream 2701819 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 2960145 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 3661453 240849 ~ 313275 (+)
G185947 NA other downstream 30141 3973765 ~ 3974123 (+)
G187510 NA other downstream 2025421 5969045 ~ 5971732 (+)
G188149 NA other downstream 2865067 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 2894500 6832987 ~ 6849135 (+)

Expression


Co-expression Network