CI01000040_04369595_04374831


Basic Information

Item Value
gene id CI01000040_04369595_04374831
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 4368465 ~ 4375355 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_04369595_04374831.mRNA
ATATATAATCAAGGTACCCAGGGAAGAATTAATATTTCATAATTGTCATATATATGCTACATACTGCGATTTTTATATTTAAAACATAATATATGAAAAATGGCACACTAAGACTTTCATCAACTATTCTGAGTGAATCAGAGATTTGAAAAAGAACATTAAAAAGAACAGTTTGAACTAATTCACAGGAATGAACTTAACACCATTGTTACTGAACTTTATGTTCAAATAGAGAGCACATTTAAATCAATGTAATATCCACAATATTCATTAACATTATATCACCAATCAAATGGCAAATATATTGTGAATATTTGATATACGGCCCAGCCCTGGTTACGTGCCCTCCGTCTTGTTGCCTCAAGTGCACTCATGATTTAAGCCCATCGTCTCAGAGTATGTTTGTTGTTGTACAGCCGTCTTGCGTGTTGTCGGGGACAACCAAGACGATGAATAAGGCCATCGATCAGGGCAGCTGGCGCAGAGGGAGCAGGGGCCAACAGTGGGGACAACAATGCTGTGCTCGGTGGGACACTGGTCTTCTCTTCCTGGAGCGCTTTGGAGGGGAAGTCGTCTGTCGAACACCCTCCAAGCCCGATCGCCGGACAGACCTGTCGAACAGGAAGAGCCCACTGATCCACACAAAGGGGCCGACAGCATGGCCAGACACATGACATCATCTCATATCAAGGACAGGCAATTCCCCCTGATTAAGACACTGAAATGAGAGACTAACAGCGTTCTCTCTTCATCGCCGTCTCAGATTTGTTTACAGACACTGACAGTCAGACGGTGTCGTCGAGAGGGGTGGGGTGGCGACAGTACGGGGTGAATGCATTAAAGTTGGCCTGAACAGCAGGAGTGGCAGCTGTGGCGGACTCCAGGCATTCTTCCTTTCATTGTGACTCAGTTGTAGGAGGGAAGCGCCCAAGGACATGAAGCTGTGGGGCTCGCATGGCACCAAAAGAGGAGGGCACCTTGTGTTTATACCCTGCCAATTCAAACTCCTGAAATATGTCTCAAATAGCACAGCTGAGGAGCTCGGAGGGGGGGCTTTTCGGTTTCGAGTGGTTGCGGCTAAAGCAGACCGGCATCCGAAAAACAATAGCACATAAAAACACAAAAAGAAAATGAAAGAGTGCTCCAACCCAGCATTGAAAGAGAGAGAGCTTCCCCCGCTTTTAGATTCTCTCAATGCAGTGCTGACTCGCTACCCAAGTGACTTCACAACGCACGTCGCCAACATCTACACCTTGTTTACATTCTCAGTGCGACCCATTCGGTTGAACTCACCTGCAACTTGTATTAACGACTGGTATGGGTCTGAAGTTTCCCCACCAACTGAGATGTTCAACTCCGAAGGCTTGAAACTTTTCGGGGAGGAATTCACCAGGGGCTGGGGTCTAGTTCTGCAAGTGACGAAGAATTTGCAAACAGCCAAGCGTACGGCCTGTCAATCATCACTCCCCACCGTCCCCAGAGGGTTTTCCTCTGCAGCGACCCCCTCCTCCTTCAAAAAAGCTAAATCGAGGAAGAAGGCGAGTAAAAAGAATTTCAGGGCTATATTGGACCTGCTAGCTGGAGGCGCTGGCACTGAAGCTTCTTACATAAATACACATTCCCAGACACCTCCAGGGTGGAGAATAATAAGGCCACCTCCATGTCACCTTCCTCTTAACATAACCGCAAAAAAGCACAGGTATCTGGAAAAAGGACACCAACCGGTGGAGATGAATATGCAGGGGGCTTCCGTCTGCTCTTTCATGACTTTATCATTTATCTGCAGAAAAATGGCTTGGGTCTTTTTGTGTGCGCAAAGAAAACAGTCAAGACTGACAGCTACCATGGCATTCTCCATCATGCCCTGCCTGGATGGTGACAGTCCACCAATCCCCCAAGGTCCAGCTGTCCCCAGACCCCCGTTGTCACTGCAAGACCAGACCAGTACCAAAAGACCAGTCGTCCACCCCGAGACTACCAGAGCAAGCAAGTGGATCATACCCCTTTGGAGCCTTCTGTCAAAGCCGGCAAAGTTAAAATCTCAAGTGTCACCCTGCACGCTTCCTTCTAAAGTGATGGAGAAGCAGGCAGTATGGAAATTAATGCCACATTGATGGAGAGCCATCTTTATAGAGGCCTTTTGAAGTCCTGACGGCACAGATCGGCACGGAGAACTCTCTGAGCGGTGCTTCAAAAGCGGGATTTCAAAACAGCCCTCCTCGCGGCGGCAAAATACGCTAGCGATATGTACACCGAGTTCTGTTAAATTGCGTTAGAAAAAAAAACAGAGCGAGGAATGTTTACCACTTACCAGCCTAATGAAATTACATGTGCACAAGCTCACACACACTCAGCCTCACGATGGGAAATTATAAGCGGCCATTACGCCGGGAGGGGCGAGGGACGTGACTGAATCTGTCTATTGAGCAAAAGGGTGGTTGGGTTTCCTGGCCAACAGCGTCCATTTCATTTTAATGGCATTGCTAATGCAAACTCACCGGGTCGGGCGCTGGGTGGGTGCGTGGTGGTGATTTGGGAGCTGTGTGGGGGGGATGGGCACACAGCGGTCCATTCATAGATACGTGGACTCTCAGGTCAGGTAAAGGGAGGGGTGTTCTGGCAGTGATATTAATGACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_04369595_04374831.mRNA True 2638 mRNA 0.48 2 4368465 4375355

Neighbor

gene id symbol gene type direction distance location
CI01000040_04063098_04068134 PPP2R2B coding upstream 300267 4062947 ~ 4068198 (+)
CI01000040_04047210_04060876 NA coding upstream 306790 4047210 ~ 4061675 (+)
CI01000040_03939728_03943493 RNF121 coding upstream 424841 3938308 ~ 3943624 (+)
CI01000040_03789687_03800746 STC2B coding upstream 567719 3789081 ~ 3800746 (+)
CI01000040_03761247_03762668 BOD1, FA44B coding upstream 605791 3761161 ~ 3762674 (+)
CI01000040_04442810_04474877 MAP4K6 coding downstream 66442 4441797 ~ 4475124 (+)
CI01000040_04475476_04499896 NA coding downstream 99957 4475312 ~ 4500113 (+)
CI01000040_04503393_04506409 HMGB3B coding downstream 126368 4501723 ~ 4506409 (+)
CI01000040_04539382_04571810 TRPC5 coding downstream 163595 4538950 ~ 4571966 (+)
CI01000040_04868857_04925336 NA coding downstream 493502 4868857 ~ 4925832 (+)
G186040 NA non-coding upstream 111175 4254987 ~ 4257290 (+)
G186064 NA non-coding upstream 116134 4252042 ~ 4252331 (+)
G186057 NA non-coding upstream 128186 4240066 ~ 4240279 (+)
G186041 NA non-coding upstream 141975 4214116 ~ 4226490 (+)
G185959 NA non-coding upstream 359174 4009068 ~ 4009291 (+)
G186128 NA non-coding downstream 34564 4409919 ~ 4410206 (+)
G186026 NA non-coding downstream 198456 4573811 ~ 4577465 (+)
G186601 NA non-coding downstream 292307 4667662 ~ 4670591 (+)
G186632 NA non-coding downstream 316005 4691360 ~ 4692423 (+)
G186695 NA non-coding downstream 546226 4921581 ~ 4946062 (+)
G185947 NA other upstream 394342 3973765 ~ 3974123 (+)
G185884 NA other upstream 629184 3738987 ~ 3739281 (+)
G185296 NA other upstream 1034482 3333578 ~ 3333983 (+)
G184003 NA other upstream 3131976 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 3390302 977184 ~ 978163 (+)
G187510 NA other downstream 1593690 5969045 ~ 5971732 (+)
G188149 NA other downstream 2433336 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 2462769 6832987 ~ 6849135 (+)

Expression


Co-expression Network