G183475


Basic Information

Item Value
gene id G183475
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 82889 ~ 87089 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU208368
TATATATATATATATATATATATATATTTATAATTATGGTATTTTGGGAAAGTTAAAAAAATAATTATATGTTATGTTATATTCTATTTACTAACAGCTTAACCCATTTTGTACTTGACATGGCTGTGATAGTTGCTGCTAAGAGGAGGCATCGCAGAGAACAGAGAGCAAGTGGTAGAAGGGAGAAAATGTTCTCTACTTGTGTTCATTTATTTGGAATGCCAGATGAAGACGTTATCCAAACATATTGTTTGCCAAGCCACATTATTTTTAATTTGCTGTGCCTGAGTTGTTAGTAGATCACCCGCACCTGATTATCATCGGCTCCGTTTGTTTGCGACCCTATGCTAATTTGTGCTGCTCTTGATAGATTGCTTTGCTCATATTGGAAATGAGCTGGCTGTGTTTGTTCTTTAATTTGCGAACGGTCACTAGGTCACCCGCAGAACTTTCCACTCCCATTGGCACTTTTATGGAATTGCAGTCTAACGTTAATTTGTCCTGTTTAGTAAATTTAGCCGGTAACACTTTAGTATAGGGAACATGTATTCACTATTAACTACGACTTTTCCCTCAATATACTCCTAATTTACTGCTTATTAATAGTTAGTAAGTTAGTTGTTAAGTTTAGGTATTGGGTAGGATTAAGAATGTAGAATAAGGTCATGCAGAATAAGGCATTAATATGTTCTTATTAATTACTAATAAGCATCTAATATTCTAGTAATATGCATGCTAATAAGCAACTAGTTAAAATACCCTAAAATAAAGTGTTACCATTTAGCCCTTTGTCCTTGTGAAGCCATACAATAGATTTGTTTGAGTAATAGATGGAAATGTGTCATTATCGCAAAAATTATCGCAATTTTTGCTTGTGCATATTAAAACATGGCACTTTTACTTGTGTTGCATCCAAAGGGGATCAAAGTTTGGTTGTTTTGCATTGTCTAGTTTGCTCAGTTATCTGCTAGATTTCATAACTACACCTTTTGGCTGCGAAAAGTCTTTCTCTGTTTACAGGCATTCACAAATATGCTCAGATAATTGATAGTGAATAGTCTAGCACTGTTCATGTTCTTGTTGTTTACTCAGCTAATCAGCATTTTCATGACGTCATTTGTCAGATGGCATTTAGATTCAAGTTAAAAAAGAAATGGCTGCAAAAGTGGTCATGATCAAACTTAGGAATGTCTTGGTTACTGTTGTAACCTCCATTCTCTGATGGAGGGAATGAGACGTGGTGTCAATGTGATGACACTAGGGGTTGTACCTGAGGAGCCAACAGTATTTCCCTGACATTTCAGCAGGTACTTCAGCGTTGTGGCAGGAGGGACACCACGTCCCATCAGGGAACAGTGGTTACAACAGTAACCGAGACATTCCCTATCTGTTAGTCACTTCGATCCTGGTGTCGATGACAGCCTTCTTCTTCTGCAGTCCCCCAAAAACAAAGAGAACAAAAGACAAAGAGCTGCTTAGAGCTTCTGAAGCTCTGCATGTGGTCGGAAATGCGCAGAGAGTGTACTGGACACAGGCTGGGTCTGCCTTGTTTCTTGCCAGCACTTGCAAGATCCGCACTTGGTCCCTAAAAGGGGTAGTGGGAACTTTGGGCACATAGCCCGGCCGGGGTCTCATGATCACGTGAGAGTATGCCGGCCTGATCTCAAGGCACGTTGCAATGACAAAGAATGCCTGCAGGTTCCCAATCCTCTCGAAGCACGGTCAGGAGTACCATCTTCAGTGAGAGGGCATCCAGCTAAACTGACTCTAGTGGCTCAAAGGGGGCTCTCTGTAGGCCCAGCAAGACTACAGAGAGATCTCATGAGGTAATAAGGCATGGCCTAGGAGGATTCAACCTCCTGGCGTCTCTAAGGAACCTGATGATCAAGTCATGCTTCCCTACTGACCTAACATTTACTGCATCATGATGTGCTGCTATGGCAGCCACATACACTTGGAGGGGACAGCTGACCCTCCAGCCTCTCCTGCAGGAAGGAAAGTCCTGACCCAACTATGCATCTCTGTGGGTCTTCCCCTCAGGAAGCACACCAGTTAGCAAACAGACTCTACTTCAGGGCATAGGCCCGCCTTGTAGAGGGGGCTCTACCACTGGTGATAGCCCACTTAAGTCTTCAGCATCCCATCCAAGGGCCAGACGTGGAGTGGAATAGTGGGAAGATTCTTAGGAAGCAAACAGGTCTACCTGTGCTTTTCTAAATCGACTCGAGATCAGCTGGACCACTTGGGGCGACACCTGTCGTGACAGCATGTCTGCTGTGCAGTTGAGTTTGCCTGGTATATGAGTGGCTCACAGTGATTTTAGTTGCAGCTGACTCCAGAGGAGATGGTGGGCGAGTTGCGACATGCGACATGAGCATAAACCGCCCTGACGGTTTATATATGCTATAGTCGATGTGTTGTTTGTCCGGACCAATACATGCTTGCCTTGGATCAACAGCCTAAACCTCCGCAGGGTCAGCAAAACTGCCAGCAACTTGACTCAATTGATGTGCCAGAGCAGTCAAGGGCCCATCCAGGAGCCCAAGGCTGCGCACACATTGCATACAGCGCCCCAGCCTGACTTGGAGACAACTGTGACAACAACGTACCTGGACACTTGTTCTAGGGGAACCTCAGCCCATAGAAATGCAAGGTCTGTCCAAGGGCTGAATGTATGCATTAGGATTAGCCAGTTGTCAATACGGGGCAAGGGCAGCCTCTGCGACTTTCGTGAAGATGCAAGTTGACAGGGACAGCCTGAAAGGGAGGATCTTGTACTGATATGCCTGAACCTCAAAAGAAAACCAAAGAAACGGTCTGTGTTGAGGTAGAATCGAGACAAGGAAGTATGCGTCCTTTAGGTCTATCGCTGTGAACCAGTCCTGTCGGTGAACGCATGTCAGAATCTGTTTCTGCGTCAATGTCTTGAACGGGATTCAGTGTATGGCCTGATTTAGAGCACATACTTCTAGGATTGGTCTCAACCCACCACTTTCCTTTGGTACAATGAAGTAAGGGTTGTAGAAACACTTCAATCTTGGCTGGAGGGACAGGATCTATTACAATCTTCGCCAAGAGGACTGCAATTTCTGCACACAGGACACAAGCTTCTTTCTCTGCCACAGAGTTAATAGGACGTCACTGAACCTAGGTAGGTGCCTGGCAAACTGAATTGCATAGCTGAGTCTGATTGTCCTGATGAGCCAGCGCGATGGGTTGGGAAGTGTCAACCATGCCACTAGACTTCTGAAGCGGAGCATTGACCGCCATATCAGAAGGCATAGCGTACCAGATCTGTGACTGTGAGTGCATATAGACACCTACCTTGCTCCGTGTATCCTGACTGCAACTGGCCTGAGATGGGCGAGGAACCTGTGCAACCCCATGACACGTTGTACTGGCCAGAGTAGGGATTTGTGTAGGTCACGGTTGAACATGAGGAGGCAAGGTGCTTGTGTCCGACATGCTCATATCGCAAACTGTGTAACCCAGGGAAGGAGGAAACTGCTACACACCACTCCCTGGAAAAGAACAGCCTCTGCCATCCCTGGGTTGCCCATCTCAGGGACGTTTCGAAGCCTCCCTCAGGTTCTTGGTGGTCGTCTGATAGATGGGAGGCTCTACACTGCAGCTGGGCTGTGGGTTCAGGCTGTGGCAGAGTTGGTGTGGCAGCTACAGGCAGATGCCCTCAGTGACGGGCAGATGGGTTGCATGCTCTCAACAGCCTGTAGGTAGACTTTGTCTGCTTCTTGCCTACCAAGCACTGCTGGGCAAAGTCCTCGACAGTGTCGCTGACTTCCACCTGGGAGACGGCACTGAACCTGGCAGGTAAGGGCAGAGAAAGGGCGGCGCCCGTCTCTAACCCCTCTGTCAGATCCAATTGTGAACCTCACGAATGGAGCCTCCGCTCTGCCTCAGCAGAAGCGGGACCCGATCCGCGGGGAACACAGGAACACAGTGTCCTGAGAGTGAGTTTTTTCGCCATAATACGTGTCTTTTTTATATATAAATATATGGATTGGTGTGAGATACTCTTGTCCTCAGACGAAGAGATTGTGACTTGTTTATGTAATAAGACAAACAACACCAAATAAGACACACGATAACACAGAGCGCTTGCTGAAGACAACAGAAGCTAGCGTTCTTTGTTCTGGGTATGCTTTATAGTTTCCTGGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU208368 True 4178 lncRNA 0.46 2 82889 87089

Neighbor

gene id symbol gene type direction distance location
CI01000040_00002763_00060396 GABRG2 coding downstream 22493 2763 ~ 60396 (-)
CI01000040_00153873_00173202 GABRA6B, GABRA6 coding upstream 66784 153873 ~ 173202 (-)
CI01000040_00413047_00426023 NA coding upstream 325916 413005 ~ 427064 (-)
CI01000040_00569008_00598590 STK10 coding upstream 481671 568760 ~ 598590 (-)
CI01000040_00623449_00625433 NA coding upstream 536334 623423 ~ 626036 (-)
CI01000040_00626750_00628543 NA coding upstream 539392 625832 ~ 628694 (-)
G183476 NA non-coding upstream 28779 115868 ~ 116094 (-)
G183500 NA non-coding upstream 101327 188416 ~ 188660 (-)
G183502 NA non-coding upstream 104072 191161 ~ 191518 (-)
G183508 NA non-coding upstream 110327 197416 ~ 313352 (-)
G183598 NA non-coding upstream 257243 344332 ~ 346939 (-)
G183474 NA other downstream 32163 46627 ~ 50726 (-)
G183972 NA other upstream 746051 833140 ~ 833541 (-)
CI01000040_02595281_02596387 FGF1B other upstream 2508157 2594895 ~ 2596728 (-)
G185593 NA other upstream 2905099 2992188 ~ 2992683 (-)
G185681 NA other upstream 3257386 3344475 ~ 3344880 (-)

Expression


Co-expression Network