Gene
RNA
| Item | Value |
|---|---|
| gene id | G183923 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 675739 ~ 676039 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU208849 | True | 301 | lncRNA | 0.42 | 1 | 675739 | 676039 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_00626750_00628543 | NA | coding | downstream | 47180 | 625832 ~ 628694 (-) |
| CI01000040_00623449_00625433 | NA | coding | downstream | 49703 | 623423 ~ 626036 (-) |
| CI01000040_00569008_00598590 | STK10 | coding | downstream | 77149 | 568760 ~ 598590 (-) |
| CI01000040_00413047_00426023 | NA | coding | downstream | 248675 | 413005 ~ 427064 (-) |
| CI01000040_00153873_00173202 | GABRA6B, GABRA6 | coding | downstream | 502537 | 153873 ~ 173202 (-) |
| CI01000040_00701332_00746419 | DPYSL3, DPYSL3.S, DPYL3 | coding | upstream | 24794 | 700833 ~ 746964 (-) |
| CI01000040_00760116_00779888 | JAKMIP2 | coding | upstream | 84077 | 760116 ~ 780882 (-) |
| CI01000040_00795062_00809762 | NA | coding | upstream | 118898 | 794937 ~ 809762 (-) |
| CI01000040_00810717_00829640 | P4HA2 | coding | upstream | 134370 | 810409 ~ 829640 (-) |
| CI01000040_00837863_00839807 | NA | coding | upstream | 161424 | 837463 ~ 839807 (-) |
| G183922 | NA | non-coding | downstream | 356 | 675171 ~ 675383 (-) |
| G183920 | NA | non-coding | downstream | 3299 | 672238 ~ 672440 (-) |
| G183919 | NA | non-coding | downstream | 5037 | 670342 ~ 670702 (-) |
| G183918 | NA | non-coding | downstream | 7168 | 668323 ~ 668571 (-) |
| G183916 | NA | non-coding | downstream | 8972 | 666424 ~ 666767 (-) |
| G183924 | NA | non-coding | upstream | 1872 | 677911 ~ 678194 (-) |
| G183929 | NA | non-coding | upstream | 5398 | 681437 ~ 681727 (-) |
| G183931 | NA | non-coding | upstream | 7711 | 683750 ~ 684016 (-) |
| G183932 | NA | non-coding | upstream | 11996 | 688035 ~ 688976 (-) |
| G183904 | NA | non-coding | upstream | 20463 | 696502 ~ 697701 (-) |
| G183474 | NA | other | downstream | 625013 | 46627 ~ 50726 (-) |
| G183972 | NA | other | upstream | 157101 | 833140 ~ 833541 (-) |
| CI01000040_02595281_02596387 | FGF1B | other | upstream | 1919207 | 2594895 ~ 2596728 (-) |
| G185593 | NA | other | upstream | 2316149 | 2992188 ~ 2992683 (-) |
| G185681 | NA | other | upstream | 2668436 | 3344475 ~ 3344880 (-) |
| G187207 | NA | other | upstream | 4588154 | 5264193 ~ 5286918 (-) |
