Gene
RNA
| Item | Value |
|---|---|
| gene id | G183775 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 700312 ~ 701605 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU208690 | True | 1173 | lncRNA | 0.38 | 2 | 700312 | 701605 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_00643738_00689792 | STK32B, STK32A | coding | upstream | 10394 | 643738 ~ 689918 (+) |
| CI01000040_00554753_00561571 | NA | coding | upstream | 137319 | 554753 ~ 562993 (+) |
| CI01000040_00512880_00513451 | NA | coding | upstream | 186715 | 512880 ~ 513597 (+) |
| CI01000040_00366809_00384965 | NA | coding | upstream | 315053 | 366709 ~ 385259 (+) |
| CI01000040_00347516_00350540 | NA | coding | upstream | 349711 | 347516 ~ 350601 (+) |
| CI01000040_00839831_00841736 | NA | coding | downstream | 138226 | 839831 ~ 841736 (+) |
| CI01000040_00849226_00851895 | NA | coding | downstream | 147621 | 849226 ~ 851915 (+) |
| CI01000040_00863147_00874526 | NA | coding | downstream | 161542 | 863147 ~ 874546 (+) |
| CI01000040_00879146_00889251 | NA | coding | downstream | 177541 | 879146 ~ 889483 (+) |
| CI01000040_00895179_00895620 | NA | coding | downstream | 193574 | 895179 ~ 895649 (+) |
| G183780 | NA | non-coding | upstream | 138 | 699712 ~ 700174 (+) |
| G183778 | NA | non-coding | upstream | 2546 | 697294 ~ 697766 (+) |
| G183813 | NA | non-coding | upstream | 4869 | 694887 ~ 695443 (+) |
| G183802 | NA | non-coding | upstream | 30642 | 669431 ~ 669670 (+) |
| G183800 | NA | non-coding | upstream | 31595 | 668513 ~ 668717 (+) |
| G183822 | NA | non-coding | downstream | 27446 | 729051 ~ 733191 (+) |
| G183825 | NA | non-coding | downstream | 40449 | 742054 ~ 742277 (+) |
| G183827 | NA | non-coding | downstream | 46389 | 747994 ~ 748295 (+) |
| G183828 | NA | non-coding | downstream | 49170 | 750775 ~ 751079 (+) |
| G183829 | NA | non-coding | downstream | 49593 | 751198 ~ 751473 (+) |
| CI01000040_00240852_00305487 | GABRB2 | other | upstream | 423457 | 240849 ~ 313275 (+) |
| G183420 | NA | other | upstream | 535390 | 157543 ~ 164922 (+) |
| G183366 | NA | other | upstream | 639915 | 53691 ~ 60397 (+) |
| CI01000040_00977184_00977458 | NDUA2, NDUFA2 | other | downstream | 272508 | 977184 ~ 978163 (+) |
| G184003 | NA | other | downstream | 528687 | 1230292 ~ 1236489 (+) |
| G185296 | NA | other | downstream | 2631973 | 3333578 ~ 3333983 (+) |
| G185884 | NA | other | downstream | 3037382 | 3738987 ~ 3739281 (+) |
| G185947 | NA | other | downstream | 3272160 | 3973765 ~ 3974123 (+) |
