G184445


Basic Information

Item Value
gene id G184445
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 933428 ~ 954673 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU209471
AAACTGAAGCTGCATGCATTCCATGCTGTTCTAGCACCTTCATTTACATTTGCATCTTTTCATCTTGAAACTCATAACCTGTATAACTCCAGGCAGCCACTCACCGTACTGTGTGATGTGAGATATACACCTGTCTATAGAACACGGCACAGAGCCTGCCCGCTGCGGTCCGTCCGTCGTCGAGCACACCGCCCTCTGCACGAGCTCATACCACTTCAGACAGCTGTGCTCCAGCTCAAACTGCATATGTAATGTCCTTTCAGCAAACTCCAGCAGGATGCAGTTATCTGAGTGCTGCAGATGGCAACGTGTTTGAGCGTCCAGAAACACTGTGTCTCTGGAGCCATGCTGTTTTGTGTGTATGGTCATCTCTCCTTCCTGAAGGGTGCACCACACTTCAGCACACTGCAGAGCAGCACCCTCCCGTATGGACGCTCTGGACACGGCACAAACTCCCAACAGATCATCATCCACCACTGCACCCGCAAGCACAACCTTCATGATATGCAACATGTGACCAAGGAGGGTGTTTCGTTCATCTGCGGAGCAAGTCAGTCTGTCTGTCAAAGTTAACACCTCAAACACATGGGTTTGCCCTGCAGAGCAGTCAAACACTGAGATGACCTCTGTTAAATCCAGCACATCACAGGCAGCAGACTCATTCCCCTGAGAGAATAAGAAACGTTCCTCATCCAGCTTTCCGTGGAGTTCTTCCATCTGTTCCTCTGAATGTCTTGTTTGCTCAAAGTCTGGTGCCTCCACAAACTCATTATGTCGGAGTAGTTCTGTCTGTAGTGCCTGTCCATAACTCTCTGCCACGCTGATGGCGGAGTGAAGCTCTGGATCTGTGGTGCTGAACGAAACTTTTGCCCCAGAACACAGCAGAGAAAGAGTCTCTTCCACATTGGGACCACACACCACCTCACGCAACCTCTGGTCAAGCAGTTTTTGGCTTGCGGCGAGCGGGTGAGCTTTGTGGTAAAGTCCTTTGCGGTACTTGGCTAGAATAAATTCCGTCCTCTGATCTGGTGAGACATCAGGTCTGATCTGCTCCGCTGGAGGGATGTTGTGACCCCACACACTCTTGGCAGCTTTATTGCCATACAGCACAAACAACTGAAAAACAAAAACATCTGTTGTTAAAAGACTATTAAACACCCATGACACCCTAAAACACTTTTTTTATGTCACTGTTAAACAAAATATAAAAATAAAAAACAATATCATACATTATTTTGAACATTTGCAAAAAAAAATAATTACTTGGGCATAAATTCAGGTTGATTGGGACACTTTTTGCCACTGAGACGACTATGGAAAAAGTATACCACTCAATCTGAATTTACAGATTTTTAAAAACAGCATAGAAACCTTGCTAGGCAGACCTACTATGAGCTTCAAGATTGTTAAATTAATTATATATGCTAGAATTAGAAGTGCAAATTAGTAGAAGGTCATTAAAGAAAAAGGCCACACCTTATATAAACCTCAATCATCCATAATGTCAAAAATCAAAAGAGCTGCCAAATCTACTGAGAAAAGAAGGTTTGACAGTCTGCTCTAATCGAGCTATCCCACCAAATTCAACCCAAGAGCAGAGCACAAGATGCCTTAAGGGTTATTCACAAACAGACCAAAGCTAACAACCATCAGATTATAGCATGTCATTTCTCAGACATAACCTGACAAATTCCTATTGAAGATGTTCAAACAGTGAAAACAATAGCCAACCAAAGGCAACCCATGTTGACGGGGTATCGCAATGTTCTGACAAAACATATTGGATACATATGAAAGATTTAATCCCTGAATAGGGAACGAGAAACTGGTGTGGCGCACCTTTTGATGTGACAATTGTCTGAAGTCATGCCATCTCAATGGCAGATGGTGTAAGCACCGCTGAGTCACTGATGCTTCATAAAGGAGCGATCATGCCATCACAATTCAGAGTTTCCCACAAAGGAAGCATAGAGGAACTGAGGAGTATGGCTGGCCACACAGTGTCTTGTTCCCTATGCAGGGAACCAAGGTAGCCGATACATTCCCTTTCATAGGCTTACTTAATGCTGTGTCAGTATCTGATGCCGTACTACGAAGAGGCCATTCATTTACCAGCCTGTGAAACAGACAGCACAGACTGACAAGGATAAAATTTGATTGAAACAGTTAAAACCTGGGAACATCAACATTATAAAACTTTATAGAAGTGTGAGGAGAGGCCCAGTGTGCGACAACACACATATCCTCCAGAGACATCCCTCTAGTCAAAGCCATAGAGGAAGCAACACCTCTAGTTGAAAGCGGCCAAAGTCAAAGAGGGGAAGTAAGCCTACGTGCCTTACAGGCCTTCAAGATTGATTACATTATTCAATGTGACATCCTTTGCTTTGTAGCCACAGAACCCCTGCTGTGACCACCAAAACAAACAAACAGTTAATCATATTTTCAGATTTATGCAGTCAGCATAAATCTTCAACACCCTTACAGGGAAAAGACTTTCCTGCAACACACTGCAGCACAATAACCTAAGATCGAAATGAAGTCGAAGCACACTTGGGTAGATAACCAAACCTTGACCTAAGCAAGGCTTTGACCATGCCGGGATCGAAGTCCAGACAAGCAGGACTGTCTGACGGTGCCTGCAAATCTTCAATCCTTTTAAGGGAAGACAAGTCCAAAGCAAGACCAACTTAAGAGTCAGAATCTCATCTAAGGCACCAACGAGGACCTGTCAAAGCCTTCAAAACCACGGACAAGTCCCAAGAAGAAATGCGTTTCACATCTCTGGCCAGGGATGCCAAATCCTTTCCCAAGCCAGAAAAAGCAGGTCCCTTCTGAGACAGAACTTCCCAAAGAGGTTCCTCCAGAAGTGACATGAGAGCCGAGATCCAAACTTGATATTGCGAAATGGAGCCATCAGCAGAAGGTGCACTCTATCCTGCTGAAGTAGAACTTCCAGAAGCAGGTGCACCGGCAGAAAGGCATAAAACTTGGCCCTGGACCAGTACTCCTTTTGAAACTCCACAAACTGGATGCCCTTCATACACTAGCCCCAGCCTATTAACAACATGTCACATGTTGTTGTTTCTAAATCCCGATATCAGACCAACAACTCTTCCAACTGTGCTAGAGTCAGCCAATCGAAAAAGGAAAGG
>TU209465
AAACTGAAGCTGCATGCATTCCATGCTGTTCTAGCACCTTCATTTACATTTGCATCTTTTCATCTTGAAACTCATAACCTGTATAACTCCAGGCAGCCACTCACCGTACTGTGTGATGTGAGATATACACCTGTCTATAGAACACGGCACAGAGCCTGCCCGCTGCGGTCCGTCCGTCGTCGAGCACACCGCCCTCTGCACGAGCTCATACCACTTCAGACAGCTGTGCTCCAGCTCAAACTGCATATGTAATGTCCTTTCAGCAAACTCCAGCAGGATGCAGTTATCTGAGTGCTGCAGATGGCAACGTGTTTGAGCGTCCAGAAACACTGTGTCTCTGGAGCCATGCTGTTTTGTGTGTATGGTCATCTCTCCTTCCTGAAGGGTGCACCACACTTCAGCACACTGCAGAGCAGCACCCTCCCGTATGGACGCTCTGGACACGGCACAAACTCCCAACAGATCATCATCCACCACTGCACCCGCAAGCACAACCTTCATGATATGCAACATGTGACCAAGGAGGGTGTTTCGTTCATCTGCGGAGCAAGTCAGTCTGTCTGTCAAAGTTAACACCTCAAACACATGGGTTTGCCCTGCAGAGCAGTCAAACACTGAGATGACCTCTGTTAAATCCAGCACATCACAGGCAGCAGACTCATTCCCCTGAGAGAATAAGAAACGTTCCTCATCCAGCTTTCCGTGGAGTTCTTCCATCTGTTCCTCTGAATGTCTTGTTTGCTCAAAGTCTGGTGCCTCCACAAACTCATTATGTCGGAGTAGTTCTGTCTGTAGTGCCTGTCCATAACTCTCTGCCACGCTGATGGCGGAGTGAAGCTCTGGATCTGTGGTGCTGAACGAAACTTTTGCCCCAGAACACAGCAGAGAAAGAGTCTCTTCCACATTGGGACCACACACCACCTCACGCAACCTCTGGTCAAGCAGTTTTTGGCTTGCGGCGAGCGGGTGAGCTTTGTGGTAAAGTCCTTTGCGGTACTTGGCTAGAATAAATTCCGTCCTCTGATCTGGTGAGACATCAGGTCTGATCTGCTCCGCTGGAGGGATGTTGTGACCCCACACACTCTTGGCAGCTTTATTGCCATACAGCACAAACAACTGAATTAAAGGCTCTGTCCAAACCTTATTATCTAGTTTCAGACCTCGTACTTTGGACCTGTTACTGCTCATGGATCGATGAGCACCTGCACAGGCCTCACAGATGACCACCAGCAGATTCACTGATGCCCACTCTGGGTTAGCAGCACCACAGTCAGCGCAAACTTTATTACTCGGATTTGACCACAGTCGATGTGCCACCTCACTGTAGGACAGCGCACTGCGAATCACGTCATTCAGATTCTCCAGCCACATGGTCGCCTCCTTAGCAGAGTCTGCAGAGAAATTAAAGGTCCTGTACGGAGTGATGAGACTGAAGCTGTGACGTCCTGTCGACTTCACAGATGCTATATTCATGGACACAAACATCATGCCGAGACCTATATTGAAGTCCTCTTTGCTGCTGTAAATCCAAAGGGAGTATCCATAGATAGCAGTGTACACCTTTTTCCTTGGGTCTTTCATGACCAGCGGCCCGTGTAGTTTGGGTGCAGTGACCGGTTCCTTCCCACGAGTGGCGTAGAGAGACACTAACCACCCTTCCTGCACAGCCTCACTATGAGCCATGAATTCAAGGTGCTTCTTATGTAAAGAGATGGAGAAATGCCTGTGATCCTGCTTCCTTATGTTGGTGATGCTCGTTACATGAAACACATATTCTGTGAACTTGTCTGTGCGTTTTTTCCACAATGACATGAGATTCCCATCTAGAGTGGTCCACAGAACATTGTGCCTGCGTCCCTTCCATACGTCGAGCCAGCTGGATTGTGCCACCGCACACTCACTGGTTCTCTGCTGTGGCCTTGTTAAACTCTGTGTCTTCCTGCTCACACGAATGGTTGCAGCCCTTGGTTTCTTGGGATTGTCAAGTTTGATATGAATGTTCTGTGATTTGGGAACTTGATGGATCACTTCAGTGGTGACAAGTCCCATTTCAGCATCCATCAACTCATCAGTGAGGCTTGGCTTGTCTGAATTGTGGTGATCCTTATTGAGGTCATCATGTGATTTTGAGGAGTTTAGAGTCACAGTGGAATCATCAGAAGAAGTAGAGTCAGCGGTTCTCTCTGCATCCGGAACTGAACTGGGACTGATGTCGTGTGATGCTGACCATAGAAACGTTTCATTGCAGTTGGTTTCAACAGCTTGAAGATCAGAGGGTTCAGTGGTGGAATCCAACTGACTAGATGAATCATCCACATTATCCTCATTTTT
>TU209467
AAACTGAAGCTGCATGCATTCCATGCTGTTCTAGCACCTTCATTTACATTTGCATCTTTTCATCTTGAAACTCATAACCTGTATAACTCCAGGCAGCCACTCACCGTACTGTGTGATGTGAGATATACACCTGTCTATAGAACACGGCACAGAGCCTGCCCGCTGCGGTCCGTCCGTCGTCGAGCACACCGCCCTCTGCACGAGCTCATACCACTTCAGACAGCTGTGCTCCAGCTCAAACTGCATATGTAATGTCCTTTCAGCAAACTCCAGCAGGATGCAGTTATCTGAGTGCTGCAGATGGCAACGTGTTTGAGCGTCCAGAAACACTGTGTCTCTGGAGCCATGCTGTTTTGTGTGTATGGTCATCTCTCCTTCCTGAAGGGTGCACCACACTTCAGCACACTGCAGAGCAGCACCCTCCCGTATGGACGCTCTGGACACGGCACAAACTCCCAACAGATCATCATCCACCACTGCACCCGCAAGCACAACCTTCATGATATGCAACATGTGACCAAGGAGGGTGTTTCGTTCATCTGCGGAGCAAGTCAGTCTGTCTGTCAAAGTTAACACCTCAAACACATGGGTTTGCCCTGCAGAGCAGTCAAACACTGAGATGACCTCTGTTAAATCCAGCACATCACAGGCAGCAGACTCATTCCCCTGAGAGAATAAGAAACGTTCCTCATCCAGCTTTCCGTGGAGTTCTTCCATCTGTTCCTCTGAATGTCTTGTTTGCTCAAAGTCTGGTGCCTCCACAAACTCATTATGTCGGAGTAGTTCTGTCTGTAGTGCCTGTCCATAACTCTCTGCCACGCTGATGGCGGAGTGAAGCTCTGGATCTGTGGTGCTGAACGAAACTTTTGCCCCAGAACACAGCAGAGAAAGAGTCTCTTCCACATTGGGACCACACACCACCTCACGCAACCTCTGGTCAAGCAGTTTTTGGCTTGCGGCGAGCGGGTGAGCTTTGTGGTAAAGTCCTTTGCGGTACTTGGCTAGAATAAATTCCGTCCTCTGATCTGGTGAGACATCAGGTCTGATCTGCTCCGCTGGAGGGATGTTGTGACCCCACACACTCTTGGCAGCTTTATTGCCATACAGCACAAACAACTGAATTAAAGGCTCTGTCCAAACCTTATTATCTAGTTTCAGACCTCGTACTTTGGACCTGTTACTGCTCATGGATCGATGAGCACCTGCACAGGCCTCACAGATGACCACCAGCAGATTCACTGATGCCCACTCTGGGTTAGCAGCACCACAGTCAGCGCAAACTTTATTACTCGGATTTGACCACAGTCGATGTGCCACCTCACTGTAGGACAGCGCACTGCGAATCACGTCATTCAGATTCTCCAGCCACATGGTCGCCTCCTTAGCAGAGTCTGCAGAGAAACTGAACAAGCCACCCAACAGTAAACAAAGAATGTAGAGCATAGAAAAGTGGTAATATAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209471 False 3155 lncRNA 0.45 9 933428 954673
TU209465 False 2331 lncRNA 0.49 16 941466 954673
TU209467 True 1464 lncRNA 0.50 9 946051 954673

Neighbor

gene id symbol gene type direction distance location
CI01000040_00837863_00839807 NA coding downstream 93621 837463 ~ 839807 (-)
CI01000040_00810717_00829640 P4HA2 coding downstream 103788 810409 ~ 829640 (-)
CI01000040_00795062_00809762 NA coding downstream 123666 794937 ~ 809762 (-)
CI01000040_00760116_00779888 JAKMIP2 coding downstream 152546 760116 ~ 780882 (-)
CI01000040_00701332_00746419 DPYSL3, DPYSL3.S, DPYL3 coding downstream 186464 700833 ~ 746964 (-)
CI01000040_00961941_00973627 IK coding upstream 7268 961941 ~ 973627 (-)
CI01000040_01002406_01015284 NA coding upstream 46049 1000722 ~ 1015284 (-)
CI01000040_01134768_01140438 SRA1 coding upstream 179746 1134419 ~ 1141116 (-)
CI01000040_01150384_01152552 SRA1 coding upstream 195362 1150035 ~ 1152552 (-)
CI01000040_01160713_01185710 HSPA4A, HSPA4 coding upstream 205402 1160075 ~ 1186329 (-)
G184436 NA non-coding downstream 22417 908093 ~ 911011 (-)
G184430 NA non-coding downstream 36289 888626 ~ 897139 (-)
G184428 NA non-coding downstream 51655 881513 ~ 881773 (-)
G183962 NA non-coding downstream 132760 800427 ~ 800668 (-)
G183960 NA non-coding downstream 134864 798352 ~ 798564 (-)
G184460 NA non-coding upstream 31189 985862 ~ 986222 (-)
G184497 NA non-coding upstream 173864 1128537 ~ 1148282 (-)
G184506 NA non-coding upstream 299518 1254191 ~ 1254738 (-)
G184573 NA non-coding upstream 327303 1281976 ~ 1284791 (-)
G184587 NA non-coding upstream 358240 1312913 ~ 1313434 (-)
G183972 NA other downstream 99887 833140 ~ 833541 (-)
G183474 NA other downstream 882702 46627 ~ 50726 (-)
CI01000040_02595281_02596387 FGF1B other upstream 1640573 2594895 ~ 2596728 (-)
G185593 NA other upstream 2037515 2992188 ~ 2992683 (-)
G185681 NA other upstream 2389802 3344475 ~ 3344880 (-)
G187207 NA other upstream 4309520 5264193 ~ 5286918 (-)
G187348 NA other upstream 4607982 5562655 ~ 5565553 (-)

Expression


Co-expression Network