Gene
RNA
| Item | Value |
|---|---|
| gene id | G184008 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 1144182 ~ 1160977 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU208948 | True | 1183 | lncRNA | 0.39 | 2 | 1144182 | 1160977 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_01065647_01124429 | CAMK2A | coding | upstream | 19753 | 1065647 ~ 1124429 (+) |
| CI01000040_01036304_01041594 | CDX1B | coding | upstream | 102413 | 1035474 ~ 1041769 (+) |
| CI01000040_00981074_00988746 | NA | coding | upstream | 155375 | 981074 ~ 988807 (+) |
| CI01000040_00977184_00977458 | NDUA2, NDUFA2 | coding | upstream | 166671 | 977184 ~ 978163 (+) |
| CI01000040_00941839_00959939 | NA | coding | upstream | 184128 | 941839 ~ 960054 (+) |
| CI01000040_01206296_01212731 | NA | coding | downstream | 45151 | 1206128 ~ 1212731 (+) |
| CI01000040_01267267_01282224 | NA | coding | downstream | 106290 | 1267267 ~ 1282435 (+) |
| CI01000040_01296612_01311591 | SEPT8, SEPT8A | coding | downstream | 135635 | 1296612 ~ 1311621 (+) |
| CI01000040_01332036_01345122 | FRMD7 | coding | downstream | 171059 | 1332036 ~ 1345156 (+) |
| CI01000040_01399805_01411103 | ATG4A | coding | downstream | 238828 | 1399805 ~ 1411675 (+) |
| G184077 | NA | non-coding | upstream | 22635 | 1075643 ~ 1121547 (+) |
| G184062 | NA | non-coding | upstream | 172608 | 970765 ~ 971574 (+) |
| G184061 | NA | non-coding | upstream | 179236 | 961089 ~ 964946 (+) |
| G184048 | NA | non-coding | upstream | 213041 | 888079 ~ 931141 (+) |
| G184005 | NA | non-coding | downstream | 1865 | 1162842 ~ 1180537 (+) |
| G184022 | NA | non-coding | downstream | 168982 | 1329959 ~ 1351377 (+) |
| G184009 | NA | non-coding | downstream | 187889 | 1348866 ~ 1388236 (+) |
| G184112 | NA | non-coding | downstream | 211195 | 1372172 ~ 1393542 (+) |
| G184117 | NA | non-coding | downstream | 264121 | 1425098 ~ 1425502 (+) |
| CI01000040_00240852_00305487 | GABRB2 | other | upstream | 867327 | 240849 ~ 313275 (+) |
| G183420 | NA | other | upstream | 979260 | 157543 ~ 164922 (+) |
| G183366 | NA | other | upstream | 1083785 | 53691 ~ 60397 (+) |
| G184003 | NA | other | downstream | 69315 | 1230292 ~ 1236489 (+) |
| G185296 | NA | other | downstream | 2172601 | 3333578 ~ 3333983 (+) |
| G185884 | NA | other | downstream | 2578010 | 3738987 ~ 3739281 (+) |
| G185947 | NA | other | downstream | 2812788 | 3973765 ~ 3974123 (+) |
| G187510 | NA | other | downstream | 4808068 | 5969045 ~ 5971732 (+) |
