Gene
RNA
| Item | Value |
|---|---|
| gene id | G184112 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 1372172 ~ 1393542 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU209067 | True | 2010 | lncRNA | 0.39 | 2 | 1372172 | 1393542 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_01332036_01345122 | FRMD7 | coding | upstream | 27016 | 1332036 ~ 1345156 (+) |
| CI01000040_01296612_01311591 | SEPT8, SEPT8A | coding | upstream | 60551 | 1296612 ~ 1311621 (+) |
| CI01000040_01267267_01282224 | NA | coding | upstream | 89737 | 1267267 ~ 1282435 (+) |
| CI01000040_01206296_01212731 | NA | coding | upstream | 159441 | 1206128 ~ 1212731 (+) |
| CI01000040_01065647_01124429 | CAMK2A | coding | upstream | 247743 | 1065647 ~ 1124429 (+) |
| CI01000040_01399805_01411103 | ATG4A | coding | downstream | 6263 | 1399805 ~ 1411675 (+) |
| CI01000040_01454703_01458555 | GPR185A | coding | downstream | 61161 | 1454703 ~ 1459283 (+) |
| CI01000040_01490929_01498480 | NA | coding | downstream | 97352 | 1490894 ~ 1498497 (+) |
| CI01000040_01535182_01539109 | NA | coding | downstream | 141558 | 1535100 ~ 1539460 (+) |
| CI01000040_01539717_01540595 | NA | coding | downstream | 146048 | 1539590 ~ 1540649 (+) |
| G184022 | NA | non-coding | upstream | 20795 | 1329959 ~ 1351377 (+) |
| G184005 | NA | non-coding | upstream | 191635 | 1162842 ~ 1180537 (+) |
| G184008 | NA | non-coding | upstream | 211195 | 1144182 ~ 1160977 (+) |
| G184086 | NA | non-coding | upstream | 221623 | 1134043 ~ 1150549 (+) |
| G184077 | NA | non-coding | upstream | 250625 | 1075643 ~ 1121547 (+) |
| G184117 | NA | non-coding | downstream | 31556 | 1425098 ~ 1425502 (+) |
| G184124 | NA | non-coding | downstream | 43398 | 1436940 ~ 1437293 (+) |
| G184127 | NA | non-coding | downstream | 47017 | 1440559 ~ 1440781 (+) |
| G184161 | NA | non-coding | downstream | 130691 | 1524233 ~ 1530255 (+) |
| G184194 | NA | non-coding | downstream | 200767 | 1594309 ~ 1594820 (+) |
| G184003 | NA | other | upstream | 135683 | 1230292 ~ 1236489 (+) |
| CI01000040_00977184_00977458 | NDUA2, NDUFA2 | other | upstream | 394009 | 977184 ~ 978163 (+) |
| CI01000040_00240852_00305487 | GABRB2 | other | upstream | 1095317 | 240849 ~ 313275 (+) |
| G183420 | NA | other | upstream | 1207250 | 157543 ~ 164922 (+) |
| G183366 | NA | other | upstream | 1311775 | 53691 ~ 60397 (+) |
| G185296 | NA | other | downstream | 1940036 | 3333578 ~ 3333983 (+) |
| G185884 | NA | other | downstream | 2345445 | 3738987 ~ 3739281 (+) |
| G185947 | NA | other | downstream | 2580223 | 3973765 ~ 3974123 (+) |
| G187510 | NA | other | downstream | 4575503 | 5969045 ~ 5971732 (+) |
| G188149 | NA | other | downstream | 5415149 | 6808691 ~ 6809130 (+) |
