G184187


Basic Information

Item Value
gene id G184187
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1622549 ~ 1634932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU209175
AAGATTTTAATGTTGGTCACTCTTGTAGAGCGTTTCTGATAAGCAAAAGCATACGGGCTTGTTGTGACAAGGAAAACAGCAAAAGGTAACTTGGCACCAGTATGAAAACACATCCACAGGAGCTCTGGGAGGTGCTTTTGCTTTCCTTTTTTGATCCCTGCCCCACATTACATGTGAACAAATGTAACACAATCTTTTACTCTGTCTAATGCAAGGCTGAGTCCACTCTCTTGCAGAGTTTGTCTCCAACCCTGATCAAACTCAGCTGCCTGTAGCTTTCTAGTAATCATGAAGACCTTGATTAGCTGGTTCAGTTGTGTTTGATTAGGTTCGGAGCTAAACTCTGCAGGAAAATGGATCTTGAGGGCCAGATTTGCCCACCCCTGGCCGATGTGATTCCAAACTTGCATGACTTTCTTTCTTCCGTGGACCCGCTTAGTACAGTGGTGCCCAATCCTGCTCCTGGAGGGCCCCAATCCTGCTCCTGGAGGGCCTCAATCCTGCAGAGTTCAGCTCCAATCCTATCCCAATCCAGATAATCAAAGTCTTTATGATTGTAGAACAGACTGAAATTAATTGTACGTTTACACAACAATGATGTACTAAAACTGGAAGTTTTTCCTTTGCGACTAAAACCGCTGTATTCTGCTGCCAGGCCAGTAGATGGCGATGTCACTTTGTAAACAAACACTACGCGCCTATAGACTGAACACATAATTCGCACGCGCATGACATTTTCAAAAATTCGCAATTTATGTAGTAAATACCGATAACGGTATCGTTTTCAAAAACTTCCTTTTGAAACCTGTTTTCAAAGTTTGCGTTTTCAGGCCCCCAAAACACCGTTGTCGAGTAAATGAACGGCTAAAGCGCATAAGAAGTTTTTTGTTTTTAGTTAAAAACAGAGTTGTGTAAACATTCGTGCCACATTCGAGACGAAGTCGGAAGTGTGAATGTTCGAGATGAAATGTCCCCAACCTCATGACACCCCACGTTCATATGTTGACCAGAAGATGTCGCTATGACACAAAGAGAGCATTTAGCAACAACAGAAAAAAAACAACAAAATGCTGCCGTTCGATTTGAAAACAGCTGACGACAAGCAAAAAATAAGGTATTATTATATAAACTCAATATCTAACGTCAGTAAATGTTTGACATAAGGCAGCTCCACGCTATGCTCATTGGAAGCAGGATTTGCCACCATCTTGGAAGTGATGTCAAATGACACGTCTCTCTAAGGTTCACAGGCTGGATGTCCAACTTTGAGCGGCATTCCAGACATTATTTCCAAGTCTGTTGATGACCGATCTCAAGACACATGAGGAGAACAACAGAGATGTTTGATGCAATGCATCTTGAGGGAAGATATTTTTAGCAGAAGAAACATTTTTAATGAATAACCTGACCCTCTTGTTATGTTAAAATCTGGATACGCCATTTGTGTTGGGGTCAAATTGACACCATTGACTGTAAAACAAATATGGACTACGCATCTGCACTCTCTTCCACTGTAGAAAAGCGAAGCCGCCGATGTCCAAATATGGTGCTGACATCTTGTGCTGATTCGGGACCTGAGTGGTATCAAGGCCTCACCCACACTCCCGCAGAATCGTTTAGTACAGTTTACAGTAGTACAGTAACTCATTATGTCGGTGTGAAATAAACAATTCTGGAAATGTAGAAATTAAAGTTAAAGCTCCAATCTCCTCCCAAAGATCCCGCTGGTGCCTCAGTGACTACTTTGCTCAGAGAAGCTGTCAGTCACAGCTGTCAATCATGATGTCACACCCCTGTTTTTATAGCATCAAATAACTAACTAAAACCAAACTTATTTAAAAAAAAAAAAAAAAAAACATTTGAACTTACACCAGCATGATAAAAACTACATAAAATGACAGAAACCAAAATTATTTGAAGTGTAATTGAACTGTTTAGTTTGTCTCGCGTCTCATTAAATTACATGGAGAGGGCGGGGTTTATGACCTATACTGGGACCAGCCACCTGGGGGCGATCGAGACACTTTAGCTTCACTTTTGAGGACTTGTGCGGCACACTTGATTGACACTATAAGAAACACTAAAGATTCATGCAACAGAAAAAAACTCTATTGTAGCTTATTAGAGATTAAAAAAATATATAATATAAAATATGTTCCATATATTTAAATTTGACCCCATATTTTTGTTTAAAACATACATAGTATCTAACATTATTTGTACATGAGTGTAAATAGCCTCTGTCTTTTTGTTGTTTTTGGTTCTCAAACCATTGTGAGGGTGAAATGGGTTTCGCATACTTTTCAGTAAACCAGAAAACATCCAGATTTTTTTTTAATGAGAAACTGAAATTGAAGAAAAAAACAGTGAATTTTCCTTGGATGATTCATAAGATAAGCCTCTAATTTTGAGTCAACTTCAAGTCTTAAATTTCATAAGTTCTTCTGTATTTTAAAAAATCTAGTGTTCATATTCAAATAAAGGAATTCTTTTTACCTGATTCTTTGCTGTTATTAAAATTGTTGCTTTTTGGCAAATTGCATAGAAACCAATTGGGAACTGAAATTTGTACAGTCTTTCCAAAACACATCTGTGTCAAAACTTTGCAACATTCATGACCCTAAATAAGAAATTGTCACATCACTTAAAAAAGAAATAAATAGCTTAACCAGTGTTTCAAGAAGCTTGAAAATCAAATGCGAGTCAAACTGACCCCAACACAATATTGGCTTCAATTTTGGTCTGTTCCTCACACAACATTATCATATGGCTTCAGAAGACTTGCAGTCTAATGGACTACTGTTATAATACTTTCTAGAATGAGAATTATTTCTTTGTGTTCCACAGAAAAAAGAACGTTTGGAATGACAAGTAACTCCATGCTCAAAAAAAGAAGAAAAAAGAATTCCTTTTCTGTTTTCGCTTTTCCATTCGCTGTCATTATTTTAAAAGATGAACTGTTAGCATTCAAATTATTTACAGAAGACTCTTAATACAACAAAGTAGTTATGTGTTAATCGTTTTCAAAACCCACACATATATCTCATTCATAAGAAACTAGAAAAACAAACATTTCTCTCTCTTTTTTTTTTTTAAACAGAATTTACAAAAGCGTCACCAGATAAAGAAAAGCCAAAAAAAAAAAAAAAAAGCATATCTACTTTACTATTCTGGTTTTGTTTTACATGAAGAAGTCATCCACACCATCAAAATAAATCTAGTTTAAATTACATAGGGGGAGAGTGGGGTAAGATGAGCCAGTGCTGTATCTCGGCAAACCGTACACTTGTATTGTAATGTGACCATAAATTTTGGAACCACCCATCATTTCTGCCAGATTGTGAAAAGGAAAAGCACATGGGAGGAGTGGAAGGCACCCATTTACTTTAAAAACATTTTTTGGCTTGTAAAAGTAAAATTCTCAGCATAAAAGATGTAATGGCTGTTATTAAAGCAAATTAATCCAGGTCTAAAAATATTTATGATGCATACTGGTGATTTAGTAATGTTATAAAACCATGCAAATCATATAGATAAATATTAGACTGAATTGGTAAGCTAGCTAATGTTGTCCAAAATGGCAGCTATGGGGCAAAGTGAGCCAAATCTGTGGGGCAAATTGAGCCAGTGTTTTAATTTACCCCACCCTAAGGCACTGAAGTTAAATTTCACATGACTTTGATTCAGATTCAGTTAGATGATCAGTTTACACCCAGATGGTGCAACTTACCCACTGACTCGGATCAACTTACCCCTAACCTGGGGTAAATTGAGCCACAGGAACACTTTTTATAAGAAGCCATATTTTTCAAACCCTTTGTCATAGATGCATTCTGATCATTTAAAATGATAGGAAACATCCTGAAAAATTACTTTAGATACTTTCATTGTACTTCCGCCTAATTTTCTCTCATCTTGCGGACCACATAAGTAAAAAATGGCTCATCTTACCCCACTCTCCCCCGACTGTACACAAATATGCAAACGCAGTCACAAATGCTTGGCCAACACATTTGAACTCTTCAACATAAAATGCATTTCTGCATTACTGTGGTGGTAACAACATCAGTACTTGTGATACAGTCACCTAGAAATGTCTGTGCCATTAAACCAAATGTTTTCAGGTAGCTAGCTTTAAACAGAAAACTAATAGGCAAAAGAAGATATTATATAAGGTGGTATGTGTGGCCGCTGATTCAGCAAGATGCTCTTAAAACTGTTGCTTTACCATGATGGTAGTTGATGTGAAAGAAAAAAAGCTTCTATGGACATTTTTCTCTGAATAATTGCAATAGAAATCGTGTTTTGACACTTTTAGGAAAGCAATTGCATGTCAAATCGCATTCACATACTTGCATTTAGCATGTTTAAAGCTTAAATCTGCTCAAAGGCAATTAAATGAAATTCATGAAAGCAGTTTTCCTCCTTTTCTTCAGTTTACGACAAAGATAAAGCTGGATGTGGTGATGGAAGCTAGCTCATCGACAAAAAAACACACAGCTTGGCTTCTTAGCCAAAGAATAAACATACCGTCCCAAACTTTCTGAATAAATGAGTACCATTTCCATTTTCCACATGGCTTGAGACATTCTTCGTGGCCTTTTTGAGCACCTCAGTTCACCACAGCTTTCAGAAAAATAAATGGCTGGTGTGCCACTGAACAGATGTTCTTCTGGGCCATGTTGTTTTGTCTATTCAGTTATCTTACATTTCAAACTTTCTTCTTAAAGCAACACCAGAACTGCTCTGTAAGAATGTTAGAAAGGCTGCCTAACCTAGGAAAAAGTGCTGCTGACCTAGAAAACAGCTGCTCGATTTCAGCACGAGGTTAACTGCAGGTTAACAAACTACAGAACGTGAGTCCAGGATAAAGTTGAGCAGGGACTGAAAAAGAGCTTCAGGAGAAATGTCAGTTTGTTATTCTCATTTCCACTTCGCCAAGCTGATTCCTCAACGAAAACCTGTGTGTGTGTGTTGGGTTAAAGAGTGTGTATGCTTAGACCAGTTCCACTTTGGAGTTTGGGTACACGGCCACCACATCATAGCCCTCAGGAGGCTGCACACGAGCCTTGGCGTGGGTCTCGCAATACAGATTCTCATCGATGAAGAAATATCCTCTCTGCTTTAGATTCAGCCCACAGTCATCACACATGAAGCAGTCGGGATGATAGAGCTTGTCTCTGGCCTTCACAATGGTATTTAAAGGAGCCAGATTGTTTGGGAGCTGACACAGGTTCCTCGTAGTCCTGAAGCATCCTGTAGACGTCTGACTGTGTGTCGAAACCATTGGGGTTGCCTGATGAGTTCAGTGGTGGTTCAGGGCTGAAACTGAAAGGAAAACATATCTAGATCTCTTTCTCTTCCATAAAAAAATCTGCTATTGCCATATGCTTTCATACTGAACAAAACACTTTCTCAGTGCATCAAGTTATTTATAAAAGAAGGAATGGAAGCCAAAATAATTGGTTTAAAATTACACATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209175 True 5483 lncRNA 0.38 2 1622549 1634932

Neighbor

gene id symbol gene type direction distance location
CI01000040_01604128_01609619 DKC1, DKC1.L coding upstream 12835 1604128 ~ 1609714 (+)
CI01000040_01579092_01597460 TMLHE coding upstream 24069 1579012 ~ 1598480 (+)
CI01000040_01553258_01557964 NA coding upstream 62382 1553258 ~ 1560167 (+)
CI01000040_01540821_01545220 NA coding upstream 77289 1540754 ~ 1545260 (+)
CI01000040_01539717_01540595 NA coding upstream 81900 1539590 ~ 1540649 (+)
CI01000040_01706518_01706939 NA coding downstream 71586 1706518 ~ 1707234 (+)
CI01000040_01707444_01725985 NA coding downstream 72349 1707281 ~ 1725985 (+)
CI01000040_01728828_01731709 KIF4A coding downstream 92840 1727772 ~ 1732232 (+)
CI01000040_01760148_01802721 AMMECR1 coding downstream 125216 1760148 ~ 1803002 (+)
CI01000040_01876498_01878546 FUNDC2 coding downstream 241566 1876498 ~ 1879308 (+)
G184199 NA non-coding upstream 20605 1601714 ~ 1601944 (+)
G184198 NA non-coding upstream 21300 1600996 ~ 1601249 (+)
G184194 NA non-coding upstream 27729 1594309 ~ 1594820 (+)
G184161 NA non-coding upstream 92294 1524233 ~ 1530255 (+)
G184127 NA non-coding upstream 181768 1440559 ~ 1440781 (+)
G184229 NA non-coding downstream 54524 1689456 ~ 1689667 (+)
G184231 NA non-coding downstream 56490 1691422 ~ 1691759 (+)
G184234 NA non-coding downstream 58870 1693802 ~ 1694200 (+)
G184235 NA non-coding downstream 60661 1695593 ~ 1695954 (+)
G184236 NA non-coding downstream 63191 1698123 ~ 1698636 (+)
G184003 NA other upstream 386060 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 644386 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 1345694 240849 ~ 313275 (+)
G183420 NA other upstream 1457627 157543 ~ 164922 (+)
G183366 NA other upstream 1562152 53691 ~ 60397 (+)
G185296 NA other downstream 1698646 3333578 ~ 3333983 (+)
G185884 NA other downstream 2104055 3738987 ~ 3739281 (+)
G185947 NA other downstream 2338833 3973765 ~ 3974123 (+)
G187510 NA other downstream 4334113 5969045 ~ 5971732 (+)
G188149 NA other downstream 5173759 6808691 ~ 6809130 (+)

Expression


Co-expression Network