Gene
RNA
| Item | Value |
|---|---|
| gene id | G185790 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 3802219 ~ 3803713 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU211007 | True | 1495 | lncRNA | 0.38 | 1 | 3802219 | 3803713 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_03789687_03800746 | STC2B | coding | upstream | 1473 | 3789081 ~ 3800746 (+) |
| CI01000040_03761247_03762668 | BOD1, FA44B | coding | upstream | 39545 | 3761161 ~ 3762674 (+) |
| CI01000040_03297317_03298657 | DRD1B, DRD1 | coding | upstream | 503323 | 3296455 ~ 3298896 (+) |
| CI01000040_03271519_03276006 | NA | coding | upstream | 526179 | 3271063 ~ 3276040 (+) |
| CI01000040_03212701_03215022 | POU4F3 | coding | upstream | 587051 | 3212701 ~ 3215168 (+) |
| CI01000040_03939728_03943493 | RNF121 | coding | downstream | 134595 | 3938308 ~ 3943624 (+) |
| CI01000040_04047210_04060876 | NA | coding | downstream | 243497 | 4047210 ~ 4061675 (+) |
| CI01000040_04063098_04068134 | PPP2R2B | coding | downstream | 259234 | 4062947 ~ 4068198 (+) |
| CI01000040_04369595_04374831 | NA | coding | downstream | 564752 | 4368465 ~ 4375355 (+) |
| CI01000040_04442810_04474877 | MAP4K6 | coding | downstream | 638084 | 4441797 ~ 4475124 (+) |
| G185877 | NA | non-coding | upstream | 75984 | 3725985 ~ 3726235 (+) |
| G185871 | NA | non-coding | upstream | 90668 | 3711244 ~ 3711551 (+) |
| G185818 | NA | non-coding | upstream | 161462 | 3561538 ~ 3640757 (+) |
| G185814 | NA | non-coding | upstream | 245858 | 3556072 ~ 3556361 (+) |
| G185764 | NA | non-coding | upstream | 248111 | 3495271 ~ 3554108 (+) |
| G185912 | NA | non-coding | downstream | 62908 | 3866621 ~ 3866854 (+) |
| G185779 | NA | non-coding | downstream | 85711 | 3889424 ~ 3891659 (+) |
| G185914 | NA | non-coding | downstream | 89566 | 3893279 ~ 3893481 (+) |
| G185915 | NA | non-coding | downstream | 89772 | 3893485 ~ 3893687 (+) |
| G185788 | NA | non-coding | downstream | 109597 | 3913310 ~ 3914476 (+) |
| G185884 | NA | other | upstream | 62938 | 3738987 ~ 3739281 (+) |
| G185296 | NA | other | upstream | 468236 | 3333578 ~ 3333983 (+) |
| G184003 | NA | other | upstream | 2565730 | 1230292 ~ 1236489 (+) |
| CI01000040_00977184_00977458 | NDUA2, NDUFA2 | other | upstream | 2824056 | 977184 ~ 978163 (+) |
| CI01000040_00240852_00305487 | GABRB2 | other | upstream | 3525364 | 240849 ~ 313275 (+) |
| G185947 | NA | other | downstream | 170052 | 3973765 ~ 3974123 (+) |
| G187510 | NA | other | downstream | 2165332 | 5969045 ~ 5971732 (+) |
| G188149 | NA | other | downstream | 3004978 | 6808691 ~ 6809130 (+) |
| CI01000040_06833701_06848731 | NA | other | downstream | 3034411 | 6832987 ~ 6849135 (+) |
