CI01000043_00776707_00791897


Basic Information

Item Value
gene id CI01000043_00776707_00791897
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 776241 ~ 791931 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_00776707_00791897.mRNA
GTATAAAATTTCCATAATGGCAGTGTTTTTTTTAACATCTCTCCACAGATTGTAGTGAACACTGGAAGATTCCAGATCCAAGTACCATTTTCAGTTCCAATTCCAATACCTAGAAAAACAGATCCTCTAATACAATGCATCATAGACAAGAAGTTAAAGAAACTTCGCAAATTAATAAAAGACAAAGATATTAATGGTTTGTACTCTTCTGAAGTCTGGAATGATGATGTTACACCATTAACAGCAGCAGTTATATGCAGAAATGAAGAAATCTGCTCTTATCTGCTTGAAGAGACGGCTGATCCTAAAAAACACTCAACAAATGGACAAACACCTCTACATTATGCTGCTTTAACAACTGGAGTTCCATTGAATATTGTGAAAAGATTACTTGCAGCAAAGGCTAACCCATCATAACCGTGAAGATATTGTGAAAGCACTTATAAAGGCTGGAGCTTCACCTGCAATGAAATATGGGGTAAATCTAGAAGTTGATAAAAAGATGGAGAGAATGATTTGTCAACTATCTTCACAGGGTGAAGTGTCTGAGAAACTCTACTTTGGTGTCATTGGTCTTGGTGCAGAGCAGTATCGTCAGAGCGCCATCAAGTGGTTAAAAGGTACAAAGAGTGCAGACAGATACATTGAGGGACTCATCAAGCGCTTCCCAAGAATCCCCCAGGAACACTGGCCGATTGCACTGAACTGCTTAAATGTTGGTTTGTGTGTCAGTGAATGCATCTCTTCTTGGGTATTCAGTGAACTTGTGCCAATTCTAACAAACAGACTTCAGCACTTTGGAAATGCACAAGGAGAAAGAGTCAATCATCTGATACTAAAGATGCTCAATGTTATGAACCTGATTGTGCGATATGTGGACTTTGCTGAAGATCACAATTTTGGATATCTTGCTCTTCAGCTTTGTGAGTACACACTGGAGGAATATATCCAAGAGCATTTACCAGATGATTCTGCTGAGAGAAGTTTGGTTCTGAAGAAGCTGGGCGAAACCACCATACGAATAAGCATTGCTGGAACTAGATGCTGGAAGGCAAAGGAGACCATAAAGAAGGAAGTCAACACTGGATACAAGAGGAGCTCCGACATTCAGGTTGCTGGGATGTTAGTGTACTACATTCTCTCTGGAGGGCACCATCCATTCGGTGAAGATGTGGAATGTGAGTACAACATTTTAAGAGGAAGATACTCACTGGAACATCTGGAGGATGATGTAAGGAGAGTGCGGTATCTGAAAATTTTGGGTCATGAGAAAGAGGCCGAAAACTGCCGTAATGCAGATAAGGAGCTCCTTGATGCCACAGAGGGGAAAAGCTTTTCTGGATGGAAAACTAAAATGGCTGTAATACATTGCAGCTTCATTGTTTTTTATCTTTATCTCAGTTGCCGTCTGAGCTTGTCCAGAAACTGGATGGTACGAAGCATCTATCCTGAGAACACACTGGGCCTGCTGCGTTTTATACGCAACCTACACGAACATTACAGCACGGCGGAGAAACACCATCCTCATCGGCCTGATGAGAAGCCTGTTGATGTTGCTGAGGGAGAGGGAGACGTGCTTCCCAACTCTCGTCCGAAAAAGAAGAAAAAGAAAGAGGGCAACTTCTTTAAGTGGCTCTCTTTCGGTGGGAAGAAAAAGTCCACCAAAAACAAGAGCTCAGATCAGGGTGAAATGAAGGACCAAGATACCGAGACGGAAACATCCAGAAGATGTACCGACGATCAAAAGTCTCTACAGTCCATCTCCAGATCTGTAGAGATCATTGATCTCGAGGAACTTCCTGCCAATGTTCTTCAAGTCCTTCCCGCTGCTGAGCCTCTGGTGCTTGAAGAGCTCCAAACTCAAGTTCACGACGCTCCAGTCAGTCTGACAGCTGGTAAAACATGTCCTCTGACGAAACCGCTGGACAGTAATGAAGTGAACATGAGACCAGAGGACAACATTTGCTGCCGATATGCAATTGGCAATAAGCTGGGGCAAGGTGGATTTGGTGCCGTCTATGAAGGCACTCGTTTGGTGGATGGCCAGAAGGTGGCAGTGAAATTTGTCAAAAAGACAAAACACACGGAATGTATCAGCATTCCTGATCATCCCGAGCTCCTTCCCAAAGAAGTCGCTCTGACAATCCTGGCCAATAAAGGTCCAGTGACAGACATCATCAATCTGCTGGACTGGCAGGACCAGCAGGACTTCTACGTCACGGTCCTCGAGCGTTTCTCGCACAGCATGGATGTGTCTCGCTTTGTGGAAAGCAACGGCGGCAGCATTGACGAGAAGTTTGCTCGGCTCATCATGTGGGGGGCAACACTAGCCGCTGATGTGTGCTGTCGCCGTGGGGTTTACCATGGGGACATCAAATTAGAGAACCTGCTGATAGACTTTAAGAACCTCGAAGTCAAACTCATTGACTTTGGATGCGGCCATCTCCTGACAGAATCTGCCTACATGAGATTCTGTGGCACAATGATGTACTGCCCTCCTGAGTACAGGATGAAGGGCGAGTTTCATGGAAAGCCGGCGACGGTCTGGTCTCTGGGGATCCTCTTGTTTAGAATGCTGTGTGGACACTTTCCAGATACTTTCGACTTCTACAGGATCAATATGAACACTTGGTACAAACCTGGCTTGACAGAAGGTGATTTGTTTATTACTTCAAGTACATTTCTAATGCAAAACTTCATAGGCTTTATAGGAGATGGCCGTATAGATAATGCAGGTGTAAGCCCGGTCACTCCAGAAGTGTCATCTGTTCATCTGTGTGTCTGCGGGCTGAATCCAGTGGCGTCTCCATCTATCCGCTTTAGCCTCTTGCATCTTGGCTTGAAGCAGCAACGTTAGCATCTGGCGATATTGCTTTCCGAAGGATGTTAAA

Function

NR:

description
LOC562179 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_00776707_00791897.mRNA False 2891 mRNA 0.45 14 776241 791931

Neighbor

gene id symbol gene type direction distance location
CI01000043_00755986_00763327 LGI2A, LGI2 coding upstream 12295 755841 ~ 763946 (+)
CI01000043_00732508_00746912 SEPSECS coding upstream 28074 732508 ~ 748167 (+)
CI01000043_00713100_00730032 ACO1 coding upstream 44198 713100 ~ 732043 (+)
CI01000043_00700044_00705027 NA coding upstream 71040 699137 ~ 705201 (+)
CI01000043_00670862_00685333 ACER2 coding upstream 90002 669493 ~ 686239 (+)
CI01000043_00814611_00818100 NA coding downstream 22621 814552 ~ 819521 (+)
CI01000043_00825755_00838325 NA coding downstream 33729 825660 ~ 838591 (+)
CI01000043_00872741_00876715 NA coding downstream 80810 872741 ~ 876985 (+)
CI01000043_00878804_00886856 NA coding downstream 86873 878804 ~ 886970 (+)
CI01000043_00898380_00913554 NA coding downstream 106449 898380 ~ 913647 (+)
G189413 NA non-coding upstream 86481 687473 ~ 689760 (+)
G189416 NA non-coding upstream 88860 687003 ~ 687381 (+)
G189425 NA non-coding upstream 111560 658279 ~ 664681 (+)
G189410 NA non-coding upstream 136363 639576 ~ 639878 (+)
G189408 NA non-coding upstream 137989 637790 ~ 638252 (+)
G189501 NA non-coding downstream 41009 832940 ~ 840609 (+)
G189528 NA non-coding downstream 57867 849798 ~ 855569 (+)
G189530 NA non-coding downstream 62556 854487 ~ 854813 (+)
G189552 NA non-coding downstream 126479 918410 ~ 919428 (+)
G189554 NA non-coding downstream 128916 920847 ~ 921656 (+)
G190241 NA other downstream 891625 1683556 ~ 1692479 (+)
G190272 NA other downstream 1649931 2441862 ~ 2443710 (+)
G191670 NA other downstream 3111302 3903233 ~ 3909966 (+)
G191644 NA other downstream 3516017 4307948 ~ 4350614 (+)
G192454 NA other downstream 4201082 4993013 ~ 4993356 (+)

Expression


Co-expression Network