CI01000043_00814611_00818100


Basic Information

Item Value
gene id CI01000043_00814611_00818100
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 814552 ~ 819521 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU215241
CACAGAGGGGAAAAGCTTTTCTGGATGGAAAACTAAACTGCCATCTGAGCTTGTCCAGAAAATGGAAATGAATAGGAAACCTTATCCTGAGAACACACTGGGCCTGCTGCGTTTTATACGCAACCTACACGAGCATTATCCAGATGACGCAGAGAGCATCAACCTCATGGATTCATTCCCCGATCTCTTCGGGAGTGTGTTCAGGTTTGCAAAGGAGAGAGGATGGAACTCCAGGGCGAGTCTGAAGAAGTTCTTCAGCTCAGTTCCACAGATTTGATTGTTGTTATTTTTAAGTATGTACATTGATTTTGCATCATGAATGTATTTCATGAATGAGTTTAAATGTGGGAACAGATGGAAGATGTGTTAAGATCCATTGATTTTTGGTAAATGAGGCCCTGACAACTGAAAAACTTTGGCTATGTTTACATGCACACCTTTTGTTTCAATCGGAATAAATTCATTCATTCCGATTGAATCATTAACAGAATTAATGTTTTTGACATGAGCACACTGCAGGAATATACAGAGTTTCCCGCTGTTTGCACATACTATTCTTCTAAATTGCTTCTTTTCTTTATTTTTAAAGAGCAGACTTAAAGAATTAGTTTACTTTAAAATGAAAATTATCCCAAGCTTTACTCACCCTCAAGCCATCCTCGGTGTATATGGCTTTCTTCTTTCTGATGAACACAATCGGAGGTATATTAATAAATATCCTGATGCATCTAAGCTTTATAATGGCAGTGAATAGGACCAACGAGTATGAAGCTCAAGAAAGTGCATCCATCCAAAGCAAAACATACTCCACATGTCTAATGGCACATGGTTAATAAAGGCCTTCTAGAGCGAAGCGATGCACTTGTGTAAGAAGAATATCCATAATTGACAAGTTATAAAGTAAAATAAGCGCGAAGTCAGTTACGCTTTCTTCTTAAGTTGAATACGGAAGGCGGAAACTTGATATTTAACTTATTTATTAATATAACTCTGATTGTGTTCATCAGAAAGAAGAAATTCATATACACCTAGGATGGCTTGAGGGTAAGTAAAGCTTGGGGTAATTTTCATTTTAAAGTGAACTAATTTTCAGGTTCTGATTAGGAGACGACGAGTGTGTGATCCATTATGCCATGCTGCTTATAATTATCAAACAGTATAAACACATCCCTTCTCATGCCCAAAATAAAGTGTCTGTGGATGAGAGTATGAAGTGAGGACTGATGGAACTTTGTTCTGCTCCACTTCACAGATAGGAGAATTGGTAGGAGAATTTTAGAATAACACAAGTAATTTATGACATTTTAACAACAATTGCAGCTGGTTCCAATCATACGTCATTATGCCATTTCTATGTCTTTGCACATGCAATGTCCTTTCCAGTTTCAGTTTTTAATCCGATCAAGTGTTTACATGTTCTCTTGATTGGATGAGAAAAGGAGTAAACCACCCCTTTCAATCTGATCAAAATTTCATTCTGATTGAGCTCAATCAGATCACTTAAGGTGTTTACATGAAGGCTTTTCAGTCCGACTGAGCCGTCAGTCCAATTACTAATGGATTATTTGGTTGCATGTAAAGTACCTGCCTACCGTTACCTGCCTGCATTGTGTCATTATCTTCTCAAGCCATCATATACCTGCAAAGACCAAGACTCTTAAGTCTGCCATTCTGCCTGCC
>CI01000043_00814611_00818100.mRNA
CTATAATGGCAATGGTGTTTAACATCTCTCCACAGATTATAAAGAACATTTGAAGATCCATGGCATTCCAGATCCAATTACCATTTTCAGTTCCACTTCCAATTCCAATTCCAGCAGGACCTAGAAAAACAGATCCTCTAATACAATGCATCATAGACAAGAAGTTAAAGAAACTTAGCAAATTAATAATAAGAGGTAGAGATATTAATGGTTTGTACTCTTCTGAAGTCTGGAATGATGATGTTACACCATTAACAGCAGCAGTTATATGCAGAAATGAAGAAATCTGCTCTTATCTACTTAAAGAGTCGGCTGATCCTAACAAACCCTCAACAAATAGACAAACACCTCTTCATTATGCTGCTTTAACAACTGGAGTTCCATTGAGTATTGTGAAAAGATTACTCGCTGGAAAGGCTAACCCAGATGGACATGGAATACAGTTTTTTACTCCATTGCAGTGTGCTGTTGATCATAACCGTGAAGATATTGTGAAAGCACTTATAGAGGCTGGAGCTTCACCTGTAATGAACTATGGGAGGAATCCAGAACTTGATAAAAAGGTGGAGAGAACGATTCATCAACTATCTTCACAGGGTGAAGTGTTTGACAAAGTACATATATCTTTCTCTTTTACTTGTGCTGTACGAACGAAAGACCAGACAGAAGTTTACAGAGTCTATAAGGATCATTTCTTTCAAGAGGATCCTTTTGATAATTTGATTTATTTTGAGCTCTACTTTGGTGTCGTTGGTCTTGGTGCAGAGCAGTACCGTCAGAGCGCCATCAAGTGGTTAAAAGACACAAAGAGTGCAGACAGATACATTGAGGGACTCATCAAGCGCTTCCCAAGAATCCCTCAGGACCACTGGCCAATTGCACTGAACTGCTTAAATGCTGCTTTGTGTGTCAGTGAAAACATCTCTTCTCAGGTATTCAGTGAACTTGTGCCAATTTTAACAAAGAGTCTTCAGCACTTTGGAAATGCACAAGAAGAAAGAGTCAATCATATGATACTAAAGATAGTCAATGTCATGATGCAGAAGACGTCTGCGCAGAAAATGAGTACAAACAATTCTGTCTATGAGAAGTTATGCAAAAGTCTATTGCCTCTCACACGTCCTGATTATTCAAGTCAAATTAGACTTTGGACCTATGGACTGTTCACCAAAATAAATTATTTTGCTCCTGACCTTGTTGCATTGTGTGGATTATCTCCCGTCCCAGAGATGATACTTATCAAAGCAGAGACAGAGATGGATGAAGTCATGAAAAAAAAGCTGCAGAAGTTGGATGAATCACTGAGAAATCCATCGGATTCAAGTGCACAAGAAGTGGGATCAAAAGAAGGTGAGCTGCTGCAAGATGAAGAGGAACCGTATCCAGACACTGTAGTGGAATCCATTGAGAAATCAAATTCCTGTGTGCCATTTACCCCGCCTGCTGAGAATCCAAATATCTCAAAAAGGTGGGTTAAGACCAGCCACCGCTGGAGACCCAAGCTTGAGAAGCTAGCTAGAATGGATATGAACAATACCTATAGGCTGGGAAACCTTACTCTTGTACTCAGAGATGAATTTCAGATTGCTAAAGGAAGTGATGGAACAGAAGTTTTTCTAGGATTGAGGAATGATGGCACAGAGGTGGCTGTGAAACGAATGATTAAGTCTAATTACCAAGTCCTCAAAAATGAGGAGGAATTTCTACGACTTCCACAACTTGATAGTTCCTCCATTGTGCGATATGTGGACTTTGATGAAGATGACAATTTTGGATATCTTGTTCTTCAGCTTTGTGAGTACACACTGGAGGAATATATCCAAGAGCATTTACCAGATGATTCTGCTGAGAGAAGTTTGGTTCTGAAGAAGCTAGTGAAGGAAGTTCTCTACAGCTTACAGGTTTTACACCAACCACAGACCAAAGTGCTTCATCGGGACATCAAACCCCAGAATGTTCTGATTGATATAAATGGAAAAGCTAGATTGGCTGATTTTGGCATAAGTCGTCGACTGAACTTAAGCCAAACGACTTTACGAACAAGCATTGCTGGAACTAGATGCTGGAAGGCAAAGGAGACCATAGAGGAGGAGGTCAACATTGGGTACAAGAGGAGCTCCGACATTCAGGTTGCTGGGATGTTAGTGTACTACATTCTCTCTAGAGGACACCATCCATTTGGTAAAGGTCCATTTTGTGAAGTCAACATTCTACAAGGAAGATACTCACTGGAACATCTGGATGATGATGTAGCGAAGGATCTCGTCGAGTGGATGATCAATGAAGATCCAAACAACAGACCAACTGTGGAGCAGACCCTTGCACACCCCTTCTTCTGGATTGATGAAAGGAGAGTGGAGTATTTGAAAAAAATGGGGAACCAGAATGAAGCCGAGAGCTGTCGTAATGTTGATGAGGAGCTCCTTCATGCTATTGAAAAATACACAGAGGGGAAAAGCTTTTCTGAATGGAAAACTAAACTGCCATCTGAGCTTGTCCAGAAAATGGAAATGAATAGGAAACCTTATCCTGAGAACACACTGGGCCTGCTGCGTTTTATACGCAACCTACACGAGCATTATCCAGATGACGCAGAGAGCATCAACCTCATGGATTCATTCCCCGATCTCTTCGGGAGTGTGTTCAGGTTTGCAAAGGAGAGAGGATGGAACTCCAGGGCGAGTCTGAAGAAGTTCTTCAGCTCAGTTCCACAGATTTGATTGTTGTTATTTTTAAGTATGTACATTGATTTTGCATCATGAATGTATTTCATGAATGAGTTTAAATGTGGGAACAGATGGAAGATGTGTTAAGATCCATTGATTTTTGGTAAATGAGGCCCTGACAACTGAAAAACTTTGGCTATGTTTACATGCACACCTTTTGTTTCAATCGGAATAAATTCATTCATTCCGATTGAATCATTAACAGAATTAATGTTTTTGACATGAGCACACTGCAGGAATATACAGAGTTTCCCGCTGTTTGCACATACTATTCTTCTAAATTGCTTCTTTTCTTTATTTTTAAAGAGCAGACTTAAAGAATTAGTTTACTTTAAAATGAAAATTATCCCAAGCTTTACTCACCCTCAAGCCATCCTCGGTGTATATGGCTTTCTTCTTTCTGATGAACACAATCGGAGGTATATTAATAAATATCCTGATGCATCTAAGCTTTATAATGGCAGTGAATAGGACCAACGAGTATGAAGCTCAAGAAAGTGCATCCATCCAAAGCAAAACATACTCCACATGTCTAATGGCACATGGTTAATAAAGGCCTTCTAGAGCGAAGCGATGCACTTGTGTAAGAAGAATATCCATAATTGACAAGTTATAAAGTAAAATAAGCGCGAAGTCAGTTACGCTTTCTTCTTAAGTTGAATACGGAAGGCGGAAACTTGATATTTAACTTATTTATTAATATAACTCTGATTGTGTTCATCAGAAAGAAGAAATTCATATACACCTAGGATGGCTTGAGGGTAAGTAAAGCTTGGGGTAATTTTCATTTTAAAGTGAACTAATTTTCAGGTTCTGATTAGGAGACGACGAGTGTGTGATCCATTATGCCATGCTGCTTATAATTATCAAACAGTATAAACACATCCCTTCTCATGCCCAAAATAAAGTGTCTGTGGATGAGAGTATGAAGTGAGGACTGATGGAACTTTGTTCTGCTCCACTTCACAGATAGGAGAATTGGTAGGAGAATTTTAGAATAACACAAGTAATTTATGACATTTTAACAACAATTGCAGCTGGTTCCAATCATACGTCATTATGCCATTTCTATGTCTTTGCACATGCAATGTCCTTTCCAGTTTCAGTTTTTAATCCGATCAAGTGTTTACATGTTCTCTTGATTGGATGAGAAAAGGAGTAAACCACCCCTTTCAATCTGATCAAAATTTCATTCTGATTGAGCTCAATCAGATCACTTAAGGTGTTTACATGAAGGCTTTTCAGTCCGACTGAGCCGTCAGTCCAATTACTAATGGATTATTTGGTTGCATGTAAAGTACCTGCCTACCGTTACCTGCCTGCATTGTGTCATTATCTTCTCAAGCCATCATATACCTGCAAAGACCAAGACTCTTAAGTCTGCCATTCTGCCTGCCATCTGCTTCATCTGTTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215241 True 1643 lncRNA 0.38 2 817771 819503
CI01000043_00814611_00818100.mRNA False 4141 mRNA 0.40 7 814552 819521

Neighbor

gene id symbol gene type direction distance location
CI01000043_00776707_00791897 NA coding upstream 22621 776241 ~ 791931 (+)
CI01000043_00755986_00763327 LGI2A, LGI2 coding upstream 50606 755841 ~ 763946 (+)
CI01000043_00732508_00746912 SEPSECS coding upstream 66385 732508 ~ 748167 (+)
CI01000043_00713100_00730032 ACO1 coding upstream 82509 713100 ~ 732043 (+)
CI01000043_00700044_00705027 NA coding upstream 109351 699137 ~ 705201 (+)
CI01000043_00825755_00838325 NA coding downstream 6139 825660 ~ 838591 (+)
CI01000043_00872741_00876715 NA coding downstream 53220 872741 ~ 876985 (+)
CI01000043_00878804_00886856 NA coding downstream 59283 878804 ~ 886970 (+)
CI01000043_00898380_00913554 NA coding downstream 78859 898380 ~ 913647 (+)
CI01000043_00930835_00959810 BRAFLDRAFT_59675, DHX15 coding downstream 110808 930329 ~ 960211 (+)
G189413 NA non-coding upstream 124792 687473 ~ 689760 (+)
G189416 NA non-coding upstream 127171 687003 ~ 687381 (+)
G189425 NA non-coding upstream 149871 658279 ~ 664681 (+)
G189410 NA non-coding upstream 174674 639576 ~ 639878 (+)
G189408 NA non-coding upstream 176300 637790 ~ 638252 (+)
G189501 NA non-coding downstream 13419 832940 ~ 840609 (+)
G189528 NA non-coding downstream 30277 849798 ~ 855569 (+)
G189530 NA non-coding downstream 34966 854487 ~ 854813 (+)
G189552 NA non-coding downstream 98889 918410 ~ 919428 (+)
G189554 NA non-coding downstream 101326 920847 ~ 921656 (+)
G190241 NA other downstream 864035 1683556 ~ 1692479 (+)
G190272 NA other downstream 1622341 2441862 ~ 2443710 (+)
G191670 NA other downstream 3083712 3903233 ~ 3909966 (+)
G191644 NA other downstream 3488427 4307948 ~ 4350614 (+)
G192454 NA other downstream 4173492 4993013 ~ 4993356 (+)

Expression


Co-expression Network