CI01000043_00872741_00876715


Basic Information

Item Value
gene id CI01000043_00872741_00876715
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 872741 ~ 876985 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_00872741_00876715.mRNA
ATGGAAATCCAGTTCCAAGTAGCAGTTCCGGTTCCAGTTCCAGCAGGACCTAGAAAAACAGACCCCATAATAAAATGTATCATAGACAACAAGGCAGAGAGACTTCGGAAATTATTAAAAGGCAGAGATATTAACGGTTTGTACTCTTCTGAAGACTGCAATGATGATGTTACACCATTAACAGCAGCAGTTATATGCAGAAATGAAGAAATCTGCTCTTATCTACTTAAAGAGTCAGCTGATCCAAACAAACCATCAACAAATGGACGAACACCTCTACATTATGCTGCTTTCACAATTGGAGTTCCATTGAATATTGTGAAAAGATTACTTGCTGCAAAAGCTAACCCAAATGGACAAGGATTACAAATTTTTACTCCATTGCAGTGTGCTGTTGATCATGACCGTGAAGACATTGTGAAAGCACTTATAGAGGCTGGAGCTTCACCTGTAATGAACTATGGGGCGAATTCAGAACTTGATAAAAAGGTTGAGAGAATGATTCGTCGACTATCTTCACAGGGTGAAGTGTTTGAGAAAGTACATATATCTTTCTCTTTTTTTTGTGCTGTAAGAACAAAAAATCACACAGAAGTTATCAAAATCTATGAGAAACATTTCTTTCAAGAGGATCCTTTTGTTCCTTTGATTTATTTTGAGCACTACTTTGGTGTTGTTGGTCGTGGTGCAGAGCAGTACCGTCAGAGCGCCATCAAGTGGTTAAAAGATACAAAGAGTGCGGACAGATACATTGAGGGGCTCATCAAGCGCTTTCCAAGGATCCTTCAGGAACACTGGCCGATTGTACTGAACTGCTTAAAAATTGCTTTGCGTGTCAGTGAAAACATCTCTCCTCAGGTATTCAGTGAGCTTGTGCCAATTCTAACAATCAGACTTCAGCACTTTGGAAATCCAAATGGTGAAACAGTCAATCTTTTGATACTCAAAATACTCAATGTCATGATGCAGAAGACGACTGAGCAGAAACTGAGATTGAACCATTCTGTCCATGAGAAGTTATGCAAAAGTCTATTGCCTCTCACACTTCCTGATTATTCAAGTTTAATTGGAATGTGGACATATAGTTTCTTTGCCTACATAAATGACTTCAATCCTGAACTTGTGGCATTGTATGGATTGACTTCAGTCCCAGAGATGATACTTAACACTGCAGAGATAGAAGATGAAGTCATAAACAAAAAGCTACAAAACCTGAACATATCACTCAAACATCCATCAGGTGCAAGGGATAGTTTACATGAGGAGACGGCTGCTCCTTCGAAGAGCAGGAAAAAGAAGAAAAAGAAGAAAAAAATCCAGCAAGAAGTGGGATCACAAGAAGGTGGGCTGCAAAATAAAGAGGAGCCGTATCCAGACACTGTAGTGAAATCCATTGAGGAATCAAACTCAAGTGTGCAGCCGTTTACACCGCCTGTTGAGAACCAAAATTTCTCAAAAAGGCTTACTCTTGTACTCAGTGATGAATTTCAGATTGCTAAAGGAAGCGATGGAACAGAAGTTTTTCTTGGTTTGAGGGATGACGGCACAGAGGTGGCTGTGAAACGAATGATTAAGTCCAATTATCAGGTCCTCAAGAATGAGGAGGTATTTCTACGACTTCCACAGCTTGATAATCCCTCCATTGTGCGATATGTGGACTTCGCTGAAGATGACCATTTTGGATATCTTGCTCTTCAGCTTTGTGAGTACACACTGGAGGAATATATCCAAGAGCATTTACCAGATGATTGTGCTGAGAGAAGTTTGGTTCTGAAGAAGCTGGTGAAGGAAGTTCTCTGCAGTTTACAGGTTTTACACCAACCACAGACCAAAGTGCTTCATCGGGACATCAAACCCCAGAATGTTCTGATTGACATTAATGGAAGAGCTAGATTGGCTGATTTTGGCATAAGTCGTCGACTGAACTTAAGCCAAACGACTTTACGAACAAGCATTGCTGGAACTAGATGCTGGAAGGCAAAGGAGAGCATAGATGAGGAGGTCAACATTGGGTACAAGAGGAGCTCTGACATTCAGGTTGCTGGGATGTTAGTGTACTACATTCTCTCTAGAGGACACCATCCATTTGGTAAAGGCCCATTTTGTGAAGTCAACATTCTACAAGGAAGATACTCACTGGAACATCTGGATAATGATGTAGCAAAGGATCTTGTCGAGTGCATGATCAATGAAGATCCAAACAACAGACCAACTGTGGAGCAGACCCTTGCACACCCCTTCTTCTGGACTGATGAAAGGAGAGTGGAGTATTTGAAAAAAATGGGGAACCAGAATGAAGCCGAGAGCTGCCGTAATGTTGATGAGGAGCTCCTTCATGCTATTGAAAAATACACAGAGAGGAAAAGCTTTTCTGAATGGAAAACTAAACTGCCTTCTGAGCTTGTCCAGAAACTGGATGGTAAGAAAAAATCATTTCCTGAGAACACACTGGGCCTGCTGCGTTTTATACGCAACCTACACGAGCATTATCCAGATGACGCAGAGAGCATCAACCTGATGGATTCATTCCCTGATCTCTTTGGGAGTGTGTTCAGGTTTGCAAAGGAGAGAGGATGGAACTCCAGGGCGAGTCTGAAGAAGTTCTTCAGCTCAGTTCCACAGATTTGATTGTTGTTATTTTTGGTTACAGTATGTACATTGATTTTGCATCATGAATGTATTTCATTAATGAGTTTAACTGTAAGGAAAGATGGAACATGAACTAAGATCCATTGTTTTGGGGAAATGAGGCCCTGACAACTGAAAAACATTTACTGTTAAAGAGGCACAATTTAAAAAACCAAGAGTCAGTAGTACATTTTTAAACAGGGTAATTTCAGTTCTTGCTTTATCTTGTGGAAAATATGTAAATATCTGTTACAGAGCAACCTCATGGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_00872741_00876715.mRNA True 2898 mRNA 0.41 7 872741 876985

Neighbor

gene id symbol gene type direction distance location
CI01000043_00825755_00838325 NA coding upstream 34150 825660 ~ 838591 (+)
CI01000043_00814611_00818100 NA coding upstream 53220 814552 ~ 819521 (+)
CI01000043_00776707_00791897 NA coding upstream 80810 776241 ~ 791931 (+)
CI01000043_00755986_00763327 LGI2A, LGI2 coding upstream 108795 755841 ~ 763946 (+)
CI01000043_00732508_00746912 SEPSECS coding upstream 124574 732508 ~ 748167 (+)
CI01000043_00878804_00886856 NA coding downstream 1819 878804 ~ 886970 (+)
CI01000043_00898380_00913554 NA coding downstream 21395 898380 ~ 913647 (+)
CI01000043_00930835_00959810 BRAFLDRAFT_59675, DHX15 coding downstream 53344 930329 ~ 960211 (+)
CI01000043_01366462_01369312 NA coding downstream 489477 1366462 ~ 1379702 (+)
CI01000043_01383746_01406582 PPARGC1A coding downstream 505194 1382179 ~ 1406593 (+)
G189528 NA non-coding upstream 17172 849798 ~ 855569 (+)
G189530 NA non-coding upstream 17928 854487 ~ 854813 (+)
G189501 NA non-coding upstream 32132 832940 ~ 840609 (+)
G189413 NA non-coding upstream 182981 687473 ~ 689760 (+)
G189552 NA non-coding downstream 41425 918410 ~ 919428 (+)
G189554 NA non-coding downstream 43862 920847 ~ 921656 (+)
G189555 NA non-coding downstream 45331 922316 ~ 922516 (+)
G189461 NA non-coding downstream 101031 978016 ~ 978431 (+)
G189477 NA non-coding downstream 142629 1019614 ~ 1019913 (+)
G190241 NA other downstream 806571 1683556 ~ 1692479 (+)
G190272 NA other downstream 1564877 2441862 ~ 2443710 (+)
G191670 NA other downstream 3026248 3903233 ~ 3909966 (+)
G191644 NA other downstream 3430963 4307948 ~ 4350614 (+)
G192454 NA other downstream 4116028 4993013 ~ 4993356 (+)

Expression


Co-expression Network