CI01000043_01842605_01846888


Basic Information

Item Value
gene id CI01000043_01842605_01846888
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 1833978 ~ 1846921 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_01842605_01846888.mRNA
ATATAAAATGCTTGAGTGCATCATGGGTCAGAATGTAGACATTTCAGCATGGCAAGATGTTGAAAATGGTGGCGAATGTTTCAGTTTCAGGCATTTCAGCCATTTAAAGTTCTGGTTACAAGCCCTTTGTTCAGGACGTGATGTGCAAATGAAGAAAAGATGAATAAATCACAGTTTACTGACATTGTGACCTTGCCATTTCTGGCAATTATGTTCTAGGCGGCAAGCCTAATTTAATTGAAATAATACACCTTCATTAGCAGACGAATCAAAAGGCCTCTTGTTCTAATCAAATCCTCCACAATAATGTGATTAGGACCATTCTAAAGAAGAAAAAAGAAGCCATTCACAACAATCACTTACCCACTAGAGCCACTGGTTTAAATAATTCATTTGGATAAGGGGATACCTGTAAAGTTAGAAAGCAACGCCTAAACAATAGAAACATTTTGTAGCTTTGAAAAGGCCATATGGTAATCTGACGATTGACATCTTCTCAGTAATCAGCTTCATGAATGATGATACTAGGAAAGCATGTCTAAAGCTTTGCATAACAATGGCTTGTTTGACATAAGTCAGAATTTAAGAATGGGTTCCATTTCAGTTCATTTGTTGGGAAATTACTTGCAGTAATGGCAGGAAAAAGAATTTATTGCATCTGCAATTTAAAGAATTTCAATGGTCACACATGTATGATAACATTTTTAATATTAAATAATACTGACTAACATGAATTATTTAAAACAGAACACTTACAGCTCTTATATGAAATTTCCAAATAAATTAGAATTTATTTGGAAATAAATCCTAATTAAAATATAAAGCTGTGTGTGTCTAAATTCAATTTTCGAAACTGAATTGAAATTTACCAACACACTCTAATGGCAATTTGTAACTTATAGTAACTAATAGTATGAAAGGGACTTTACATTTGTCAAAAATAGAACTTTTTTGTTATTAAATGTTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCCCCTCATGTTGTTCCACACCCGTAAGACCTTCGTTCATCTTCGGAACAAAAATTAAGATATTTTTGATAAAATCTGATGGCTCAGTGAGACCTGCATTGCCAGTAAGATAATTAACACTTTCAGATGCCCAGAAAGCTACTAAAGACATATTTAAAGACATATTTTTCAAAACACTGCTTCATGAATCTTTGAAGCTTTACAAATCTTTTGTTTCAAATCAGTGGTTCGGAGTGCGTATCAAACTGCCAAAGTCACACCATTGAAACCATTGAAATTTCGAAACACTTATGACGTGACAAAAGCCTTGTTTACTGAAATCACGTGATTTTGGCAGTTTGCTACACGATCCGAACCACTGATTCGAAACAAAGGATTCGTAAAGCTTCAAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCTTTACTAGATATTGTTGAATAAAGTCGTTATTTTGTTTTTTTGCCGCACAAAAAGTATTCTTGTCGCTTCATAGCATTAAGCTTGAACCACTGTAATCACATGAACTGTTTTAAATATGTCTTTAGTAGCTTTCTGGGCATCTGAAAGTGTTAATTGCCTCTCACGGAGCCATCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAAGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATTACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGAAACAATCAAGCAAGCCCAGAGAAAAAGTAATGCAAAAGTAACATAACACATTACTTTCCATAAAAAGTAACTAAGTAACACAATTAGTTACTTTTTTAGAGAATAACGCAATATTGTAACGCATTATAAGTAACTTTCCCCAACACTGGTAGTTACTTTTTCTCATGAGATTGGGTTGGAATTTACAAGGTCTTGATGCAGTTCTGAATGGCGCTCAACTCTTCCGCACACACCTGCTTTTTGCCAGAAATACAGTGTCATTGTGTCCTTTTGGGTTTGTTCTTCATGATTTGATACAAAACCTGTTTCCTTGACAACATATGGTCTATGTGGCAGAGCCTCGAGGTGTTGCCTCTGACGGACACATGCTGTTTTTGTGTGAAGACGAGTTTCACGGGCCCGGCTATGACAGTTCGCTACATGCACATCAGGTGTTATCAGCACAATGTCTGTCTGTAGGAGGAAGATAACTGGAGAGTCATGTTTCAGAGAGATCTGCTGTGGATTTCACCTGCTTTTAGGGCTTAAGGTCAGGCTTTGCTTCTCTCCAGATCTTCCTCAGTGTCAGTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTGCCGTTATTCATTGATTCCCTTCATGGTCCCTCCTTCTGCTCTGTTTTTATTTTCCCCCCCCATCTTTAATTTGGCTCTCCGCCCCCTCTGCTCTCCTCTCATCTGTTCTCAGTAAGAAGATGCAGACAGTTTGAATGATGTTAAAGGCAGAGCTCTCTGTCCAGTGCAGCGGTCAGAACATGACCTGACCCAGTCGACATGATGAACTTGGAGGGACTAGAGATGATTGCGGTCCTGGTAGTGATTGTTGTCATTGTTAAGGTTCTGGAGCAGTTCGGACTTTTAGAGGCAAGCTATGATGCTAAAAATAGATATTTTGCACAGTTGGATGCAAATGGCTTCTTTCACCTCGTCTCTGCTGGAGTGGCAGTGAGTGACGGCAGTGTGCCACCAAATGACACAGGCATGATATCAGATGACATGAGAGCAAAGATGATGGCTCTGACAGGATCTCAAACTGAGGAAACAGAAGCTAGATTCACTTTTGTGACTGCAGCAGATTAAAGTAGAAAGTGAAGAAAGAACCGTCATTGTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_01842605_01846888.mRNA False 2861 mRNA 0.37 2 1840083 1846921

Neighbor

gene id symbol gene type direction distance location
CI01000043_01704935_01732125 NA coding upstream 107862 1704833 ~ 1732221 (+)
CI01000043_01626021_01650266 ADGRA3 coding upstream 188270 1626021 ~ 1651813 (+)
CI01000043_01423076_01424727 NA coding upstream 415353 1422804 ~ 1424730 (+)
CI01000043_01383746_01406582 PPARGC1A coding upstream 433490 1382179 ~ 1406593 (+)
CI01000043_01366462_01369312 NA coding upstream 470196 1366462 ~ 1379702 (+)
CI01000043_01896926_01915626 KCNIP4 coding downstream 50005 1896926 ~ 1915626 (+)
CI01000043_01970557_01977108 NA coding downstream 123636 1970557 ~ 1977689 (+)
CI01000043_01992845_02000632 NA coding downstream 145924 1992845 ~ 2001617 (+)
CI01000043_02033302_02075904 NA coding downstream 186381 2033302 ~ 2076148 (+)
CI01000043_02129173_02152417 NA coding downstream 282252 2129173 ~ 2152667 (+)
G190265 NA non-coding upstream 20012 1644685 ~ 1820071 (+)
G190270 NA non-coding upstream 42685 1787065 ~ 1797398 (+)
G190256 NA non-coding upstream 137753 1692620 ~ 1702330 (+)
G190292 NA non-coding upstream 200762 1638856 ~ 1639321 (+)
G190290 NA non-coding upstream 206881 1632833 ~ 1633202 (+)
G190262 NA non-coding downstream 1542 1848463 ~ 1895241 (+)
G190230 NA non-coding downstream 74111 1921032 ~ 1927918 (+)
G190306 NA non-coding downstream 106573 1953494 ~ 1953807 (+)
G190336 NA non-coding downstream 276740 2123661 ~ 2123885 (+)
G190338 NA non-coding downstream 279607 2126528 ~ 2126828 (+)
G190241 NA other upstream 147604 1683556 ~ 1692479 (+)
G190272 NA other downstream 594941 2441862 ~ 2443710 (+)
G191670 NA other downstream 2056312 3903233 ~ 3909966 (+)
G191644 NA other downstream 2461027 4307948 ~ 4350614 (+)
G192454 NA other downstream 3146092 4993013 ~ 4993356 (+)
CI01000043_05114193_05114497 BOLA3 other downstream 3266965 5114193 ~ 5114497 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034262 NA non-coding NC_007118.7 CM002891.2 70049868 ~ 70052062 (+)