XLOC_000093 (myo15ab)


Basic Information

Item Value
gene id XLOC_000093
gene name myo15ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8442071 ~ 8507230 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000182
ATGTATTCTATAAGGAGCCTGCCTACTGTCAGCTACAGAGTGAAAAGAAAAGGGGATGGTACTGAGGACATGACACAAATGGAACAGCTTACTGAGCCTGCAGTACTGATAAACCTGAAGATTCGCTTTGATCAAGAGCTTATATATACCTACATTGGCAGTATTCTGGTATCTGTGAACCCATACCAACTTTTTAACATCTATGGCACAGATATGGTTCTGCAGTACGAAGGCCATGCCATGGCAGATAACCCACCtcaTCTCTTTGCAATTGCAAACGTTGCCTACACAACAATGATGGACATCAAACAAAACCAGTGTATCATTATCAGTGGGGAAAGTGGTTCTGGAAAAACAGAAGCAACCAAACTGGTTCTGAGGTACCTCACTGCAATTCACCATAAGAGAAACATTACACAACAGATTCTAGAGGCGACTCCTCTGTTAGAGTCATTTGGGAATGCTAAGACTGTCCGAAATGATAACTCCAGTCGCTTTGGAAAGTTTGTGGAGATCTTCTTGGAGGAaGGGGTGATCAGTGGTGCCATAACCTCGCAGTATCTACTAGAGAAGTCCAGGATCGTTTTTCAGgcCAAAGATGAGAGAAACTACCACATCTTTTATGAGATGTTAGCTGGACTTCCTTCTCACACGAAGCGGGCCTTCTATCTACAAGAAGCTGAAACCTACTACTACCTGAACCAGGGTGGTAATTGTGGGATCACTGGAAAGGATGATGGGGAGGACTTCAGGAGGCTACAGAGTGCCATGGACATTCTTCACTTCAGTACTGAAGACCAGAGCAGCATATTCAGAGTGCTGTCATCCATACTTCACCTAGGAAATGTCTTTTTCCACAGAGTGGAGACAGAAGTGCAGGAGACGGCCGGTGTGGTGAGCACTCAAGAGATTCGTGCAGTAGCAGATCTGTTGCAGATTTCTCCAGAGGGTCTGCAGAAAGCCATCACCTTCAAAGTGACGGAGGCAATGAGAGAGAAGATATATACTCCACTCTCAGTAGAAAGTGCCGTGGATGCCAGAGATGCAGTTGCCAAGATCCTTTATTCCTTGCTCTTTAACTGGTTGACAGATCGCATCAATGGTCGGGTCTACCCCAGAAATGAGGCGCTGTCCATATCTTTATTGGATATATATGGGTTTGAGAGTCTGGTTTTCAACAGCTTTGAGCAGCTCTGCATCAACTATGCCAATGAGACCCTGCAGTTTTTTTTCAGCAAAATCATTTTCAAACAGGAACAGGAAGAGTACATTCGAGAACAAATCAACTGGAAAGAACTGACATTCACTGACAACCAGGCGTGCATAGACCTCATCTCTGCAAAGCCTCATGGTTTACTCCGCATCCTTGATGACCAGAGCTGCTTTCCACAGGCCACTGACAATACCTTCCTTCAGAAGTGCCACTATCACCATGGAAACAACCCTCTTTACTCCAAGCCAAAAATGCCACTGCCAGAGTTCACTGTCTATCACTATGCTGGTCGAGTAACTTACCAGGTCCATAAATTCCTGGATAAAAACTTCGATCAGGTTCGGCAGGAAGTGTTGGATCTGTTTATGCAGAGCCAGAACCGAACGGTGTCCAATCTCTTCATAAAGCATTCTGAGATGCTGAACCAGCAAAAAGGAGCGATGAACAGGAGCAGCACAGTGACCCGGAGATATCAACCCTCAACCGTGGCCGCCAAGTTTCAGCAGTCATTACAAGAGCTCTTAGACAAGATGGAGAGGTGCAACCCATTTTTTGTGCGCTGCATAAAGCCAAATAATAACAAGCACCTCAAAGTAAATGACCAATGTGTTTCCAGGTACAAAGCTCTGCTGGGAATGAAAAAGCCACCACCTTCAGATGGCGATAACTGTGTCATGATGTTAACGAAGCTCTGTCCAATCAACAAAGGAGATTATCAAGTGGGTGTGTCAAAGctcTTTCTAAAAGAGGAGGTGTATCAGCTGTTGGAGAGTAAACGTGATCGTGTGATGCATATAGCTGCACTGACCCTTCAGCGTTACGTACGGATGTTTTTTGCCCGGAGGAAATTTCTTAAGTTCCGTTTGACTATGACGCATCTTCAGGCTCACTGCAAAGGCTTCATGGCCAGGCAACGATTTCTACGGATGCGTATAAACCTAATCAGGCACCGCGCAATGATCCGACTTATCGTCAATCGCAAAAGATACATCAGGGTATGTTTAGTTTGTGTTTCTTCTTTTCTGAAGGAGCGAATAAGCAGGGAGGTGGTAAACGTGACTCAGCTGGTTATTCCTGCGGAGCTGGGAGGATTGTTACAGGCCACAGCAGgTGGTCGGGAGCGTCATTCAGACTGCTTGGCTTTGGTTCAGGCTCCTAGAATACAGACTGACCCTCAGCTCACTCTTCCACTCGATATCAACAACCATTTGATGACCAAATACATCCGCACACATTTCAGGGAATTGCTGTTTGGGATGCTAACAGCACCGCTGGAGAACTCACTGACCCGTTTAGAAGATGATTTGAAACAAGACGCTGTTGATGTGTTCATACTGATTTTGAGGTTCATGGGAGATCCGAATTTGAACGGAGCTCAGGAAAACCTCTTTGGAAATTATATCATTCAGAGAGGCCTTGCCACTCCGCCAATCAGAGATGAGATCCTAGCTCAGATAGCCAATCAGGTGTGGCGGAATGAAAACAGTAGAAATGCCGAGAGAGGCTGGTTGCTGATGGCTGCCTGTTTGAGTTCATTTGCCCCGTCTGAGAAGATGGAGAAATATCTGCTGAAATTTGTGTCAGACTACGCTCTGAATGGCTTTAAGGCTCTGTGCCAACACAAACTCCTCCAAGCCATGCAGAAATCTTACCTGGTCCCTGAAGCCTCTCGAACATACCCTCCATCACTGCTAGAGTGGACTGCCACACGCAAGAAGGCACACATGGTGCTCCAGGTGCACTGTTTTGATGGTGTGTCTTTCCTGTGTCCTGTCCATTCCTGGACCAACGGAGAGGGCCTTGCTGGAGATGTTCTACAACAcagAGGCGTGTCTGCTGAGAGCCGATGGGGTTGGTCAGTCCTGATGAAGGAGCCTGCGCAGTGGGTGGAGCTAGAAGGTCACGATTATGTTCTggatctggtgtgcgacctggaGCTGCTTCCAGACTTCCCTAAACAGAAAACATACTTCATCATCTCTACTGAAGACCCCAGCAAGGCTCGACCTAACGCCAGCATAAGTCTTTTTGGCAGTGGATTTGACGAGGATGAGGATGGGCCACTTTCATATGCCAACCGAATGAGCGCCGTTCCAACCAACAGTCTACCCATTTCTGAAGGCCACTACAGTCTGGACTCAGAACCATCCTATGATGCCACTCAGAGAGGGATGGATCGTTATTTGGACAGCTTGTTTGACCCAGTTCTGTCTGATGCAGCTGGGGACTTTGATGCATCAGTTTTGTCTGGTAGGATGAAGGGTGGAGGAGGTGTAGGTGGAGATGAAGCACAGCACACTGCTAAAGTCACTCCCTTAGCTGCTCTTCAGCCTGGAGCAGTGAGAGTTCTACCACCTATGCCACCTATGCCTGGTTCTCCAATCATGCCCAGTCTGCCAGCAGTACCACCTGTGCCTGTGCCAGACCAGCAGCATGCGGTGCTCGCTCAACAGCAACAAACCATCCTCAACCAGCAAGCCGTCATTATGGCTCAGCAGATGACTATGCAGGCGATGGCTATGGTGACCAGTCCAGTGTCCAGTCCACCAATGTCTCCTCTCACCAGTCCCCCAACCAGTCCTCCACCCACTCCCTACAGCACTCTTCCACCCAGCCCGTACCCCGCCATCCCTCCCAGCCCCTACGCAAACATCCCTCCCAGTCCTTACGCCCCGATGTCTGCATACAGCAGTCCACCAGTGACGCCCACACAGACCTTCGCCTCCACCCCCAACTACAACGCCAGCAGTGAGACCCTAAAGAAGAAGAGCAGCCCCCCAAACACACAGCCGCGGAGCAACACAAAAACACAGGCTACTCCATCTAAAGGCTCATTAGGGAAGAAACAAGCCCCTGCTGCACCAATCAAACTTGACAGCAGGCCTGCAAAAAGACATGCTCCAGTTGCAGTCACCGGTCCCATGCGCTCGACTCCAGCTCCTGGCACAGAGGTGGTCAAATATTCAGTCTCCAACTCTGAGCACATCGTTCCCAGCCACAACATTAAAGATATCATTAAGCAATATCAAACACCCACCCCAGAGCCTGCGCCGCTGAAACAGAAGAGAGATGGTAAAGGTTTTGTAAAGAAGAAGAACCCACATGACGAGGCAATGCAGATCCTAAAAACACAGATGGACAATCCTCCTCCTCCCCAGAGACATGCTCCCACTCCGGCTGCTGTGTCGAGAGATGAAGGCCTTAAACCAACGAAAAGCAGCAAGAAGAAAGCCCCAGAACCTCCTCTGACTTTACCACCACCTGTGTCCAGAGATCTTCCAGTGGAAACTGAGAGCATCCAAACACCGCTGCACCGGAGCGGCACTGAGGAGCATTACACATATACAAATGTCCCCTGGAAAATTTACCTTAGGAAGGAGGTCTTCTACCCCAAAGACAGCTGGAACCATTTGCTAGTTCTGGACCTCATATTCAAACAGATTGTTAATGACACATTTACAGAGGCCTGCGTGCGCATTACTAAAGAGGAGAGACAGAAGATGAAGTCCTTGTTTGCACAATATGGCATTGAGCCAAACACAGATGTTCAGGATGAGAGTGTAAAGAAAACCGTGATTGCAGCTGCCAGGGAGTCATGGGAGATTTATTTTTCCCGCCTCTTTCCTGCCTCTGGCAGTGTTGGTACTGGGGTGCAGGTGTTGGCAGTGTCACACACTGGTATCAAACTACTCAAGACTGTGAAAAGCAGCACTGCAGCTCCAGACTACTTCAGAGTGCTCCGACCATACAGTTACCTGGACATCTTATTTGTGACCATCCCCTCTCCAAACATGCTGGAGTTCAATCTGATGAATGAGAAATTGATTCTGTTTTCCGCCAAAGCTCCTCAGATCAAACAGATGGTCGATCTCTTCATCTCTCACCTCAAGAAGGACTCGGAGTATGTTGTAGCAGAGAGAAACTTCATCACAGAGGACAGATCTCTTCTGAACTTCCATAAAGGAGATATCATTCGTCTGCAGGCAATGGATGGATTAGAGGAGGgtCAGAGTTACGGCTGCGTTGTGAAGAAAAAGGTCATCTACCTCGAGGAGCTGAAGAGAGGCACACCAGACTTTGGCTGGAGGTATGGGGCGGTTCAAGGTCGGAGTGGAGCGTTTCCCATGGAGTGTGTGGTTCCTGTAGCTGCTCCTGATTTCCTGGGGCTCCCGGCAGAAAGGAGAGATGAGCCGAGAGACAGACAGGGCCGAGTGGCAGCATCAGGAGCAATCGCTCTTGCCGTGGCCTCCACTGCGGCTGCACATGAGCTAGACCCCTCACTAGAGTCTGATGGATTCGGGGATTTCGGTGACTCTGAAGCTGAAGGAAATGTTGTTTTAGACAGCCAGTACAATATGGTGGAGTTTGCCAGGAAATATTTTAGAACATCAGATGGAAGCAAAAGTGATTCATTCAGGGATAAGTCCAAAAAAGGTAAAGGAAGCAAAGACCCTGCAGAGATGGtgaaattcaacaagAACCCCATCCTAGAATCCCTCATAGACTTCACTGACCCCAACATGAACCGGGTTGCTTCTGAAATTTTCCTAGCCATAATGAAGTTCATGGGAGATCATCCTCTCAGAGGCCAATCAGAGCAGTTTGTGGTTTGCACTTTCCTGAAGTTAACGGGTGAATATGGACTGATGAAGGATGAGGCGTACTGTCAGGTCCTCAAACAGATCACAGCCAATACCAGCTCGAAACCTGACAGCTGTCAGAAAGGCTGGCGCCTGCTCTACATTCTCACTGCATTTTACCGCTGTTCTGAAGTGCTCAAGCCTTTCCTACTCAAGTTCCTACGAGACGTCTGCAGGAGTCCAGAAGTGCACTTTCATGGAATTGCTAAAACTTGTGAGCAGAACCTCAGGAAGACGTTTCAGTTCGGTGGCAGGAGTGTTTACCCCAGTAGCATGGAGCTTAAAGCCATCATgGCTGGTCGAAGCTCGAAGCGGCAGCTTTTTCTCTTTCCAGGAGGAATTGAGAGACATTTGAAGATCAAAACTTGCTCTGTGGCGCTGGATGTCATAGAGGAGTTGTGTTATGAGATGGCTTTACAAAGGCTGGAGGCCATGGATGAATACACAGTTTTCATAGTCACCAACAGAGGTCAGAATGTGCGTCCACTCAACAAGAGAGAATATATATTAGACATCGCAACAGAGGCAGAGCAGATCGATGCCAACTACAGCTTCTGGTTCAGACGGGTCATCTGGGCTCATCCGCTCAAGTTTGACAACGAACTCTGTGTCACCATGCACTATAACcAGGTTCTGCCAGACTATCTGAAGGGTCTGTTGAATATTGTACCTCAGGGAAAGATCAGCGAACAGCAGTTTAACCAGTTTGCCAAACTCGCTGCTCTTCAACACCGAGCCAAAGACAGTCTCTACACTCCTACTATTCATGAGCTGATGGAGTACATCCCGGTTGAGATTTTTGGCAGGCAGATCCCTCAGCAGTGGATGCAACTGGTTGCTCAACATGTGCATGCTGTCCAGAGCCTGAACCCTCACCAGGCCAGATCCCAGTTCCTGGGTTTGGTTTGTGCCTTTCCCATGTTTGGCTCGTCCTTCTTTTACATCCAAAGCAGCAGCAACAACACCATATCAGCACCATGCATCCTTGCTGTCAATCAAAACGGACTGCACTTCCTGCACAAAGACACTCATGAGGTGCAGGTGAAGGTGCAGCTGAAGCAGGTTCAGTCAGCTCACACACAGCGGCCCAGCGCTGGATCCAGTTACCCTTATGTAGACGTCCTTATAGGAGACTTGACCAACCACAGAGTCACGCAGTTACAGCTGGAACAGGGTCTGGAGCTGTGTCGAGTTATCGCCATGCACATCGAGAATATGCTTTCTGTCCGAGAGAAGAGACTCACTCTGCCACCCAGTGAAATCACCATGCTGTAA
>TCONS_00000183
CTAATAAACTCTGGCTCTCTCTCCCACAGTTACCTGGACATCTTATTTGTGACCATCCCCTCTCCAAACATGCTGGAGTTCAATCTGATGAATGAGAAATTGATTCTGTTTTCCGCCAAAGCTCCTCAGATCAAACAGATGGTCGATCTCTTCATCTCTCACCTCAAGAAGGACTCGGAGTATGTTGTAGCAGAGAGAAACTTCATCACAGAGGACAGATCTCTTCTGAACTTCCATAAAGGAGATATCATTCGTCTGCAGGCAATGGATGGATTAGAGGAGGgtCAGAGTTACGGCTGCGTTGTGAAGAAAAAGGTCATCTACCTCGAGGAGCTGAAGAGAGGCACACCAGACTTTGGTTTGACGTTTAAcaagacttttttattattttttatgtcttaTATTGTGTAACCAAACTGTAGATATTTTCTCAGGGGa
>TCONS_00000184
atgtatatgtGGAAATACTACTGTTTAGGGTCAGAAAATGTTTTCAGGGGTAAAAATATATTTCAGACTGACAGCTGTCAGAAAGGCTGGCGCCTGCTCTACATTCTCACTGCATTTTACCGCTGTTCTGAAGTGCTCAAGCCTTTCCTACTCAAGTTCCTACGAGACGTCTGCAGGAGTCCAGAAGTGCACTTTCATGGAATTGCTAAAACTTGTGAGCAGAACCTCAGGAAGACGTTTCAGTTCGGTGGCAGGAGTGTTTACCCCAGTAGCATGGAGCTTAAAGCCATCATgGCTGGTCGAAGCTCGAAGCGGCAGCTTTTTCTCTTTCCAGGAGGAATTGAGAGACATTTGAAGATCAAAACTTGCTCTGTGGCGCTGGATGTCATAGAGGAGTTGTGTTATGAGATGGCTTTACAAAGGCTGGAGGCCATGGATGAATACACAGTTTTCATAGTCACCAACAGAGGTACAGATGATGATTTTTCATCTCTATAA

Function

symbol description
myo15ab Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to act upstream of or within sensory perception of sound. Predicted to be located in cytoskeleton. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; actin-based cell projection; and vesicle. Is expressed in neuromast and otic sensory epithelium. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 3 and sensorineural hearing loss. Orthologous to human MYO15A (myosin XVA).

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0007605 sensory perception of sound biological_process
GO:0030050 vesicle transport along actin filament biological_process
GO:0016459 myosin complex cellular_component
GO:0098858 actin-based cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0031982 vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000146 microfilament motor activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function
GO:0030898 actin-dependent ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-149 Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to act upstream of or within sensory perception of sound. Predicted to be located in cytoskeleton. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; actin-based cell projection; and vesicle. Is expressed in neuromast and otic sensory epithelium. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 3 and sensorineural hearing loss. Orthologous to human MYO15A (myosin XVA).

Ensembl:

ensembl_id ENSDARG00000078474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000182 False 7128 mRNA 0.48 62 8442071 8507230
TCONS_00000183 False 438 mRNA 0.42 3 8487456 8489295
TCONS_00000184 True 498 mRNA 0.44 5 8492379 8498200

Neighbor

gene id symbol gene type direction distance location
XLOC_000092 cacna1hb coding upstream 38066 8304904 ~ 8404005 (+)
XLOC_000091 SLC5A10 coding upstream 278904 8110562 ~ 8163167 (+)
XLOC_000090 CR855320.2 coding upstream 452757 7988052 ~ 7989314 (+)
XLOC_000089 CR855320.1 coding upstream 480375 7956030 ~ 7961696 (+)
XLOC_000088 en1b coding upstream 758699 7679328 ~ 7683372 (+)
XLOC_000094 alkbh5 coding downstream 1523 8508753 ~ 8516595 (+)
XLOC_000095 mief2 coding downstream 14093 8521323 ~ 8532009 (+)
XLOC_000096 smcr8b coding downstream 27468 8534698 ~ 8540050 (+)
XLOC_000097 NA coding downstream 66547 8573777 ~ 8575057 (+)
XLOC_000098 AL928650.2 coding downstream 68077 8575307 ~ 8577274 (+)
XLOC_000087 NA non-coding upstream 767842 7672121 ~ 7674229 (+)
XLOC_000084 NA non-coding upstream 929309 7512529 ~ 7512762 (+)
XLOC_000082 CABZ01075319.1 non-coding upstream 1326157 7092273 ~ 7115914 (+)
XLOC_000081 CU929161.1 non-coding upstream 1378128 7063837 ~ 7063943 (+)
XLOC_000080 NA non-coding upstream 1452044 6956913 ~ 6990027 (+)
XLOC_000100 NA non-coding downstream 80000 8587230 ~ 8590636 (+)
XLOC_000105 NA non-coding downstream 443644 8950874 ~ 8965939 (+)
XLOC_000106 NA non-coding downstream 460249 8967479 ~ 8976422 (+)

Expression


Co-expression Network