CI01000043_03157095_03221503


Basic Information

Item Value
gene id CI01000043_03157095_03221503
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3156717 ~ 3222623 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_03157095_03221503.mRNA
ATTTAAAAATAAATTACATGCATACAACCTCAGATGCAGTATTGTCATGATAATAATATGAACCTTATGAACTTCTAGATTATTAATAAATTAAGTCTCAACTGGTTCTTTATGATTATCTATCTTGTTAATGATGTTGAATCTCTCAACACTCTACCAAGGACATCTAGCATTTGCCATCAGTGTATAACAGTAAAAAGGGCTGTTCTAACTTTTTTTTATCTAACCTTTTTTTTTTATTATTATTATTATTATTTAATAAAATAAAATAAAATGTGTATTATGTGGACTTATTTAATAATTATTGTCAAGGTTAAGCCTTTTGGAAAGAAAAAAACCCAAAAAAACATTCAAAACCTGCATACATATAAAGTAAACATGACCAAATCAGTCGCACATCCGCATTCAGAAGTACTGTCTAGGTGTTTGGCTCAGCCGATGTGGACTCTCATTATCTGCACTCTCCTTTTACTCTTAATGGAATACTCAGAGGGTGCAGCAGCTCACGTTTGGCATGCTTTTCCTCCCAGACAATGCCCTTCCTCTAAGAAAGGTGCACGGGAGCAGTTCTTTACTCGCTCTACCTTTTTGGAGGTGGAGGAGCGAGAGGCTCTGATCCTGGAACTACAGGATGTCATCACTGAGCTACACCAGGAGATGTCTCTGAAAGAACAGCATGAGCTCCAGCAGCTTCAACAGCTGCTTCAGCTGGAGGCCAGAGTCAAAGAGCTTCAAGAGCAGGTACAGGGTTCAGAAGAGACTATAGCTCAGCTGAGACTAGAACTGGCTGAGAGAGCGCAGAGCAACAGCGGCATGCTGAATGTTGTGACGTCTGGAGATGAGAGATTTTTTTCTTTTCCGTCTGAGGTTTGTGACCCTCAAGTAAAATCAAATATCAAGGGTCTTAAGGGCCTGGGTGGGAGCAGCCTCCCAATTCTGAGACAAGTGCTGCCCTGGGAGTTGCATGAGGCCAGCGCCTTGGAGGGCTGCATCCAGCAGACCCGCGGCTTATGCGCAGTCTTGGGTTTGAAGCTTTCTAATGCTAGCAGGGCTCTGTCGCTGGATTCCATACGAAGCTCCATGGGGAGGGATGGACCAACAGAGGCCGTTTGCTTGGTCCAGAAGTGGACGACTAACAAGGTCACACCAACCTCAAGGTCGGGAGGGAACAAACGCCTTGCAATATTTCACAAGTGTCTCAGTAGACACTCAAACAAATGTACACATACACAAAACACGTCCCTTCAACAGTTTGAGACTGAAATAATCACATGCTCCAAACGTGGTGCTTATCTGGGAATTGCAGCAAAATGGAGGTGCGGTCGTGGCAGAGGAGGAAGGCATGAGACGGATAGTCACATGGACACGGCCACTCCTCCAATTCCCATTCCAGAAGAGGGCTGTAAAGGGGGATCGCCATGGGCAGGAGGTGTGACCGTATGTCAGAGTGAAACTGTAGGGGCTGATGGAAGCTTCCTGAAAGTCATTGGTGGGACGGGGAGATTGTGTGCTTTAAGGATGTTCTTGGCCATGGGTAGTGAGGAAATAATTGATTGTGTTGAAGTGGAGTTGGCCGAGGCCACGCTAGTCATTGTGAACAGGATTGCTTCCACTGATTTCACAGCCCTCAGAGGAACACAGCTGTTGAAGACTGAGGCCCGTGACGCCCAGAGCGTTCAGTCCACAATCTGGCAGGAATTCGAGCGTTTGCTATGCCAACAAACGGATGGGAAGACGAGACAAGGTTTGAAGTGCTTGTCACCAGACCACAATCAATGGCTGGACGTCCAAGAGCAGAGGCTGTGGGATCTGCAGAGAGAGCTGCAAGAAAGCCAGCAGGAGCTCCAGAGGGGACACAACTACAACCAGCAGCTGTACGGACAGCTACAAGATGCCAGGAAGCAAGACCAGGAGCTACAAGCTCAGCTCTCGGAGGTGAAAGGGAATCTGGTGAAGGTGCAGGTGGAAAATGAAGCTCTTCTGGAAATTAAACGGCACCAGGCCACTGAGGTGGACAGAGTCTCTGCGGAGCTTAGTTTGGTTCGGTCCACGGTGTTGCAAAAGTGCGAAGAGGCCCAAGAAGCTAGGAAGAAATGCCACGAACTGGAGGATGAGCTGTCTGTTGTTCAAGCCAACCTGAGCCGGCGCCAGGAAGGGACGCAGGATGCCAAAAACAGGCCTGCACTTAATCCCAGCACTGCTGGCTCAGGAACAGATTACTGACAGCAGATGTGATGAGAGCAGAGCAGGGGAACATGACACACACACACACCTCCGATTCTCATTATGAAAGAACAGTGCAGCCATTTTCTCACTGCTTTGTTTGTTCTGAGCTACCATCTTTGCTCTGGTTATTGTCTCCTTCTCAAAACATTTCTGTGTTTGATGGTAAACATTTGTGATGTGAATTTCATAATCTTTGTGCATGTGTGTTCACAGACTGAGCTGATACAGCGGCTGGAGGAAGAAGTGTCCAGGCTGAAATCTCAGCATAGTTCAGTCTGTCAGCAGGTATCTGTCTTTACTACCCCACACTCTTATTTCTGCCTTTTGGCTTGTCCCACACCTCCCAGTGTTACCATGTCAACATACTGTAACTGCCACATCTCCACTATAATATTGAAAGGCAATCAAAGGTTGTATGGTATTAATTCAAGTCGTATGGTTTTGGCAATGCCCTCAAGCAGTTATTTAGTATCTAGACAAGTTAGCTAAGCTTATATTTCAATAATAGTAATACAGTTTAATCAAATGTAAGCAAATGTGTGACACTGATCATGATCACTGATCATTCTTGCTTTCATAGAAGCAGTAAATGCTTTTTGGATCAAGACATGCTAGACAACATGATCTGAGTTTTCACAGAACTTGTGAAGTTTATGCAGCTTGTGTGGCGCTGCCATTATAGAAAAAAAATAAAATAAAATAAAATAAATATATATATATATATATATATATATATATATATTTTATTTTTAAATAAAAAATCAAGGTGAAATAAAATTAAATATTATTTATATATATTTTCTATAATGGCAGCGCCACACAAGCTGCATAAACTTCACAAGTTCTATAATATATATATATATATATATAATGAAAAATAATGGGGAAAAAAGGCAAAAAATTAAATAATAGAGGTCACCACTATATGTAAAATCACCAATAATATTGCTTAAAAAAACTGGGGATTTGCGGGGGAAACTGCAGGCGGTTTGTGGTTTTGTAACAGCTCTCTGTGCATGTAATTTAAACACAAAAAAAATCACTTTTTTTTTTTTTTAAATACATAAATAAATATTAAAAAACATTAAATAAAAACAATAAATATTAAACACTTTGA

Function

NR:

description
PREDICTED: plectin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_03157095_03221503.mRNA True 3343 mRNA 0.42 19 3156717 3222623

Neighbor

gene id symbol gene type direction distance location
CI01000043_02945803_03044928 ZFHX3 coding upstream 111789 2945803 ~ 3044928 (+)
CI01000043_02884506_02898339 NA coding upstream 258353 2884418 ~ 2898364 (+)
CI01000043_02834135_02840882 NA coding upstream 315704 2832049 ~ 2841013 (+)
CI01000043_02787002_02807892 NA coding upstream 347861 2786832 ~ 2808856 (+)
CI01000043_02504537_02519367 CRISPLD2, CRLD2 coding upstream 636085 2501923 ~ 2520632 (+)
CI01000043_03270751_03284680 NA coding downstream 48128 3270751 ~ 3284762 (+)
CI01000043_03292361_03301513 NA coding downstream 69738 3292361 ~ 3301513 (+)
CI01000043_03600460_03603309 NA coding downstream 377652 3600275 ~ 3603404 (+)
CI01000043_03630982_03636231 PSMD7, PSD7, PSMD7.L coding downstream 406681 3629304 ~ 3636429 (+)
CI01000043_03678916_03691863 ZNF143A coding downstream 456193 3678816 ~ 3692052 (+)
G191097 NA non-coding upstream 4863 3151627 ~ 3151854 (+)
G191094 NA non-coding upstream 7029 3149204 ~ 3149688 (+)
G191086 NA non-coding upstream 16903 3138396 ~ 3139814 (+)
G191067 NA non-coding upstream 47425 3109039 ~ 3109292 (+)
G191066 NA non-coding upstream 47727 3108649 ~ 3108990 (+)
G191182 NA non-coding downstream 59462 3282085 ~ 3283570 (+)
G191183 NA non-coding downstream 62208 3284831 ~ 3285055 (+)
G191056 NA non-coding downstream 124316 3346939 ~ 3351641 (+)
G191224 NA non-coding downstream 209973 3432596 ~ 3432894 (+)
G191226 NA non-coding downstream 224389 3447012 ~ 3447221 (+)
G190272 NA other upstream 713007 2441862 ~ 2443710 (+)
G190241 NA other upstream 1464238 1683556 ~ 1692479 (+)
G191670 NA other downstream 680610 3903233 ~ 3909966 (+)
G191644 NA other downstream 1085325 4307948 ~ 4350614 (+)
G192454 NA other downstream 1770390 4993013 ~ 4993356 (+)
CI01000043_05114193_05114497 BOLA3 other downstream 1891263 5114193 ~ 5114497 (+)
CI01000043_05169578_05171795 CLEC3A other downstream 1946982 5169578 ~ 5171848 (+)

Expression


Co-expression Network