CI01000043_03292361_03301513


Basic Information

Item Value
gene id CI01000043_03292361_03301513
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3292361 ~ 3301513 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_03292361_03301513.mRNA
ATGTGTGAACAGGAGAAGCTTATAAACACACACCAGGATCATGTTTCTGAGCTGCAGCTCCTCACACACAGACTGCAGGAGGAAGGGCTGAACTGCCAGACTCAGCTGCAGCTGTGCAGGAGACAACTGGAGACCAGAGATGACCAAGAGCAAAAACACCACCAAGAGATGAGCAGTCTGCAGGCTACAGTGTCCAAGCTGAAGCTGGATCTGGAGCAGGAGCGGGAGAAGTGGCGGCAGGGGGTACGAGAGGCAGCCAAGGCCGATCAGAGAGGGAGAGAGCTGAGACTGGAGCTCAGCACAACACAGGCCTCTCATAAAGAGTATATGGAGCTGCTGGCAGAGTACAGTCGAGAGGTGGCGGCCCAGAGGAGTGAGCAGGCCCGTCTGCAGCAGTGCCTGATCCAGCTGACAGAGGAGAGGGCGGCTCAGGAGGAGCGAGTCAGACAGATGAGTGCAGATCTACAGAGAGCGCACAGTGAGAGCAGGTGTTCTCAGGAGGAGCCGTATCAGAGGAAGGCCAGTAATGATTCTCGCCAGTCGTGTGGAACGCAGCATGCGGGGAAGCGGGGGGAGACAGACGCGAGAATAAAGGCGGCTATCATTTCTGTGTGTGTGTTTGTCTGCCTGGCACATAATTATGGTTGCATAAGGTTGTGTATTCATATGGCCAGGGCGTGTGAGGGGCGACTGGCGGAGCTGCACTCCCAGCTCTCACGCTCACAGCAGTGGGCGCAGCAGCACATGACAGCCCTGCAGGCCAGAGAGGAGGAAGTGCTGCTGCTAAAGATGGAGATGGCTGCTCTCAGAGAGAACTACAATGCTAAAGTATCTCAGGTTGAGGCTTTGCACTCACAGATGGACACTGTTGATCAGAAATATAACGCAGCCGTGTGTGAGGTGGATGTTTTGCGGCAGTGCTTAGGAGACGCACGGAGTGACAGCTCTCGACTTCACAGGGAAAGTGAACTAGTCGTGACCAATGTGAACCAATGGGTGAAGGAGCAAAACATCATGGTTCATTGTGACAGCAGCTCGCAGCTTCCTCACTGCAGCCCATTATCTCTGCCCCTGCTCCACTCCAGGCACACTAATGAGAAACTGGCACTCAAGATCAAAGACCAGAGCAGGAAGATCATCCACCTGACAGCCGAGAGAGATCACCTTCAGGAGAATTTGAAGGGTTTGCAGGGGGAAATCAGGAGGCTGAAAGCAGAGAGAATGGAAGCAGAGCAACTGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_03292361_03301513.mRNA True 1242 mRNA 0.54 8 3292361 3301513

Neighbor

gene id symbol gene type direction distance location
CI01000043_03270751_03284680 NA coding upstream 7599 3270751 ~ 3284762 (+)
CI01000043_03157095_03221503 NA coding upstream 69738 3156717 ~ 3222623 (+)
CI01000043_02945803_03044928 ZFHX3 coding upstream 247433 2945803 ~ 3044928 (+)
CI01000043_02884506_02898339 NA coding upstream 393997 2884418 ~ 2898364 (+)
CI01000043_02834135_02840882 NA coding upstream 451348 2832049 ~ 2841013 (+)
CI01000043_03600460_03603309 NA coding downstream 298762 3600275 ~ 3603404 (+)
CI01000043_03630982_03636231 PSMD7, PSD7, PSMD7.L coding downstream 327791 3629304 ~ 3636429 (+)
CI01000043_03678916_03691863 ZNF143A coding downstream 377303 3678816 ~ 3692052 (+)
CI01000043_03696702_03699679 NA coding downstream 394957 3696470 ~ 3699879 (+)
CI01000043_03718802_03730935 TRIP4 coding downstream 416447 3717960 ~ 3731638 (+)
G191183 NA non-coding upstream 7306 3284831 ~ 3285055 (+)
G191182 NA non-coding upstream 8791 3282085 ~ 3283570 (+)
G191150 NA non-coding upstream 86250 3205889 ~ 3206111 (+)
G191133 NA non-coding upstream 104305 3187818 ~ 3188056 (+)
G191117 NA non-coding upstream 121286 3170835 ~ 3171075 (+)
G191056 NA non-coding downstream 45426 3346939 ~ 3351641 (+)
G191224 NA non-coding downstream 131083 3432596 ~ 3432894 (+)
G191226 NA non-coding downstream 145499 3447012 ~ 3447221 (+)
G191228 NA non-coding downstream 147652 3449165 ~ 3451134 (+)
G191047 NA non-coding downstream 177773 3479286 ~ 3543374 (+)
G190272 NA other upstream 848651 2441862 ~ 2443710 (+)
G190241 NA other upstream 1599882 1683556 ~ 1692479 (+)
G191670 NA other downstream 601720 3903233 ~ 3909966 (+)
G191644 NA other downstream 1006435 4307948 ~ 4350614 (+)
G192454 NA other downstream 1691500 4993013 ~ 4993356 (+)
CI01000043_05114193_05114497 BOLA3 other downstream 1812373 5114193 ~ 5114497 (+)
CI01000043_05169578_05171795 CLEC3A other downstream 1868092 5169578 ~ 5171848 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035237 pmfbp1 coding NC_007118.7 CM002891.2 67817256 ~ 67842997 (-)