CI01000043_03325623_03351622 (DHX38)


Basic Information

Item Value
gene id CI01000043_03325623_03351622
gene name DHX38
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3325388 ~ 3353062 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_03325623_03351622.mRNA
ATACACTTTACTACTACTACTACTAATACATTAAATATGCTGGACATTGTTATTCTGAAGAAGAAATCGCTTGGTAAAAAGTGATGGTAAGTCTGATTCATTAGGGAGTCGGTTCTTTCGGACGGATTGTTTCAAATCGGTTAAAATTCACCAATTCGCTAGCAATCACTCAAAAATGCTTCCAGGCGCTCAACTTTACTGTGTAGTTTGATTAAAGCATGCTGTTATCGCCACTTTTTCAATAAGCTTTGCAAATCCCATATTGAATTAAGTGTGACATGGTTAATAAAATGAACTGAAAAGCACGAGGTGGAGACCAGAGCCGTTGAAAAACATATTTAACGGCTCTGGTGGAGACAAAACGTGTAACCCACAGAAAGGGCCAATGAACGAACATAAGACTCAAATCAAACCCTGATCACAACCAGCATCTCCCTGCTTACTCCAAAACGATTTTTTACAATCGTTTGATTTACTAAAGCTTTGAGATCCGGTTGACTGAATCGTTTAGAACAACCGGTTCAAAAAATTCGATTCGTTGAGGAATCGGACTGGAATCACGGACGTCACTTCCTTGTGAATGCTGGGATAGTAATGGCGGCCTTCTGTACACATTGTTGACGTTTACCGCTATGCTAGTTCATTAAATGTTTTTTTAATTTATCACACAGCGAATAACTTTTATTATACAGTGTAGAGCAGTTTTGACGAACCCATCGTTTGAAAGGTAACTCCGTTTTTTTTTCTTATAAATGAGTAGTGCTGTTTTATAATAACAAATTATAGAGATTCATCATGTACATCAGTGACCGGTTTAATCGGCTCCATTCCTCAGTCTAATAAACGTAAATATTGATAACATTGTTTACATGACGGCAGCGCTGGTTCTATTTTCACATTGATATATTATCAGTTCAGTTATTAGTGTTTGTTTACCTTACTGTGGCACCCCAAACACTATAACGTTAGTTACTATAGTTATTGGTAATATTTTAAGACTTACACCAAACGTTAAACATTAAATTGAATTCTAAATTATTTTGGTATCTCCTTCAAAATTATAGGTACGTTAGTTGAAGAATCTTCCTGTCATGTATTGTTGTTGTGACAGTTGTGGCTAATAATACCTCCATGTACATTTTAACAACATTAGCTGTAGTAACTGGTATTGTGATAGAAACATTACTAGAAAATGACTTTTTTTTTAGGGGCAAAACCTAACCGTTGTATTGTTTTGGGGCATTTTAGACATATTTATGTAACCGTGTCCATTTTCCAGTTTTTACTTTTAACTTATAATTAGCTACATGTACTTATATTAATAACATGTTTATCAGCACGTGTTTACTTGACTTATAACACAAAGGCTGTGTATTTTTGGCCCAAATCAGTAACTTTTTGCAATCGCTTTATAGATAGAACAGAAATCCATCAGCTGAGATGGAAGAGATGGAAGATGATTCCTCCCTGCATCGACTAGAAGGGAGTGACCCCAGTGTGCAGGTCGGGGGGCTGATAGTGAAGAAGAAGAGCGCTGCAACAGAACAGCATGTGTTCAGAGCGCCCGCTCCACGCACCTCGCTCCTGGGCCTCGATCTGCTGGCTGCCCAGAAACGCAAGGAGCGTGAGGGGAAGGAAAAGCTGGATGATCAACCCAAGAAATCCAAGGTGTCGTCCTACAGGGACTGGGAGGAGGGAAAAAGTGATTCAGGGTCTGATGATGAAACTGAAGAGGATGGCGAGAGCAGGAATGGGAAAAAAGAAAGGAAGTACCGTGTCACTGGCTCAGAAACGCCATCAAACCCAGGAGGGGTTAGTGAGGAGTTCAAGCGGAAAAATCAACAGAGGGAGAAAGACAGACATGAACGGGAAGGCAGCCGCAGCCATGGATCCAGCAGCAGTCGTTCCGAGCGCGGTGACGGCAGTGTGAGGAGTGAACGCTCTCAGAGGGACGGCACGTCCGAGCGCATGAGCCGTGGTACTCGCCGCGATGAGCCCGAATCACCCCGTAACAAACTCAAAGCTGGGATGAAGATGACAGCGGATATTCCAGCTCACGTCACTCACACTGGGAGAGCCCGTCTCCTGCTCCCTCGCACCGGGAGTCCGACCGCTCCGAGCGCAGCCATCGTTCAGTCCGCGACAGTGAGAGGAGAGACAGGTCAAGTAAACCTCAATATCCAGCAGATACTCCTCTACCAACCCCATCATATAAGTACAACGAGTGGGCCAATGACAGGAAGCATCTTGGCTCCACCCCACGCCTGTCCAGAGGAAAAGGTAAAGACACCCCTTACAAGTTATTTTTGTGGAGAATGTGGTGATAAAAGGGAAGATAGAGAGGACGGCATCCTGTTTAATAATGAAGATGAGAAGGAACAGTGGGAGGAAGATCAGAGGCAAGCTGATCGAGACTGGTACATGATGGATGAAGGTTATGATGAGTTTCACAACCCATTGACGTCCAGCTCCGAAGAGTATGTGAAGAAGAGAGAACAGATCCTACAGAAGCAGACCCAGAAACGCATCTCAGCGCAGAAGCGGCAAATCAATGAGGATAACGAACGCTGGGAGACCAACCGCATGCTGACCAGTGGAGTGGTTCAGCGCTTGGAGGTGGACGAGGACTTTGAGGAAGACAATGCGACCAGAGTCCACCTACTTGTCCATAACCTCGTGCCACCCTTCCTGGACGGGAGGATTGTCTTCACTAAGCAGCCTGAGCCAGTCATTCCAGTGAAAGATGCCACCTCAGACATGGCAATCATCTCCCGCAAGGGAAGTCAGCTTGTCCGACGACACAGAGAGCAGAAAGAGAGAAAGAAGGCACAACACAAACACTGGGAGCTTGCTGGCACCAAACTGGGTGACATAATGGGAATCAAGAAATCAGAGGAGGAGGGATCAGATGGAAAAACTGTTGGAGAAGATGGAAATGTGGATTACAGAGCGGAGCAGAAGTTTGCTGATCACATGAAGGAGAAGAATGAAGCGAGCAGTGAGTTTTCTAAGAAGAAGACTCTATTAGAGCAGAGACAGTATCTGCCCATCTTTGCTGTTCGCCAGCAGCTGCTCAACATCATCAGGGATAACAATATTGTGATTGTGGTCGGGGAAACGGGCAGTGGTAAGACGACTCAGCTGACGCAGTATCTTCATGAGGACGGTTACACCGGCTATGGCATGGTGGGCTGCACACAGCCTCGCAGAGTGGCAGCCATGAGCGTGGCCAAGAGAGTCAGCGAAGAAATGAACAGTAACCTGGGAGAAGAGGTTGGTTATGCCATCCGTTTTGAAGACTGTACATCAGAGAACACTGTAATAAAATACATGACGGATGGGATTCTTCTGAGGGAATCTCTGCGAGAGTCAGACTTGGACCACTATAGCGCTGTAATCATGGACGAGGCCCATGAGCGCTCCCTCAACACTGACGTGCTCTTCGGGCTGCTCCGAGAGGTGGTGTCTAGACGCTCAGACTTGAAGCTCATTGTCACATCTGCCACCATGGACTCGGACAAATTTGCGGCATTCTTCGGCAATGTTCCTATTTTCCACATTCCAGGCAGGACGTTCCCAGTGGATATCTTGTTCAGCAAGACTCCTCAGGAGGACTATGTGGAGGCGGCTGTGAAACAGGCCTTACAGATTCATCTCAGCGGGATGTCGGGTGACATCCTCATCTTCATGCCTGGTCAGGAGGACATTGAGGTGACATCAGATCAGATTGTGGAGCGATTGGAGGATCTAGAGAACGCTCCAGCTCTGGCAGTGCTGCCCATCTACTCCCAGCTGCCTTCAGACCTGCAGGCAAAGATCTTCCAGAAGGCTCCTGATGGAGTGAGGAAGTGTATTGTAGCTACAAACATCGCCGAGACGTCTCTGACAGTGGACGGCATCATGTTTGTGGTGGATTCTGGTTACTGCAAACTGAAGGTGTTCAACCCTCGCATTGGCATGGATGCGCTACAGGTGTACCCCATCAGTCAAGCCAATGCAAACCAGCGGTCTGGCAGAGCGGGCAGAACAGGCCCAGGACAGTGTTACAGGTTGTACACTCAGAGTGCCTTCAAGAATGAAATGCTCACCACCACTATCCCAGAGATCCAGCGCACTAACCTGGCCAATGTTGTGCTGCTGCTCAAGTCACTGGGAGTGCAAGACCTTCTGCTCTTCCACTTCATGGATCCACCACCTGAAGACAACATGCTGAACTCCATGTACCAGCTGTGGATCTTGGGAGCTCTTGACAACACAGGCGCTCTGACGCCCACCGGGCGGCTCATGGTGGAGTTTCCTCTGGATCCGGCTCTGTCGAAAATGCTGATTGTGTCATGTGACATGGCCTGCAGTGCTGACATTCTTATCATCGTCTCCATGTTGTCAGTGCCATCCATCTTCTACAGACCAAAGGGTCGAGAGGAGGAGAGTGACCAGGTGAGAGAGAAGTTCTCAGTGCCTGAGAGTGATCACCTGACATACCTCAACGTTTACCTGCAGTGGAAGAACAACAATTACTCCAGCATCTGGTGTAACGATCACTTCATCCACACCAAAGCCATGCGCAAGGTGCGTGAGGTTCGATCTCAGCTCAAAGACATCATGGTGCAGCAGAAAATGAACCTGATCTCCAGCGGCTCTGACTGGGATGTGATCAGGAAGTGCATCTGTGCTGCGTACTTTCACCAGGCTGCTAAATTAAAGGGAATAGGGGAGTATGTGAATGTGAGAACTGGGATGCCCTGCCATCTGCACCCCACCAGCGCTCTGTTCGGGATGGGCTACACCCCTGACTACATCATCTACCATGAATTGGTCATGACCACAAAGGAGTACATGCAGTGTGTGACGGCAGTGGATGGAGAGTGGCTGGCTGAGCTCGGGCCCATGTTCTACAGTATCAAACATGCAAACAAGAGCAGACAGGAGAACCGAAGGAGAGCCAAGGAGGAAATCTCCATCATGGAGGAGGAGATGTCCCTTGCACAACAACAGATCCTTGCACGGAAAGAGGAGCAGGAGAGGAAGAACCACCTGGGCAGCGTCAGGAGAGAAAAAGAAATAATATTGACTCCTGGCTGACCCCCATTACTGTAGCAATTTAAATTGTACCGCCTCGGACGGGGAGGAGAGAGACAGACGCTAATTTTCAGACTAATCCTGGAAATTAATTTTACACACACCTGTCAGCTCCACAAAAGCGGGAAATGTGTCCTGTAAAATAACACTTCATTAATTAATCAGGACTTTTATCTCCGTATCAAAGCCTTCGGCTGACAGTCTGCGTGATGGACGTCCTGACAATAATCACATTAAA

Function

symbol description
dhx38 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa 84. Orthologous to human DHX38 (DEAH-box helicase 38).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12815 DHX38, PRP16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_03325623_03351622.mRNA True 5317 mRNA 0.47 26 3325388 3353062

Neighbor

gene id symbol gene type direction distance location
CI01000043_03138222_03139281 NA coding downstream 185755 3137166 ~ 3139633 (-)
CI01000043_03133480_03136057 NA coding downstream 189063 3133429 ~ 3136325 (-)
CI01000043_02912881_02924260 NA coding downstream 400973 2912876 ~ 2924415 (-)
CI01000043_02868129_02876445 NA coding downstream 448923 2867416 ~ 2876465 (-)
CI01000043_02725571_02730393 NA coding downstream 594528 2725152 ~ 2730860 (-)
CI01000043_03356337_03361772 CYB5B coding upstream 2989 3356051 ~ 3363143 (-)
CI01000043_03377513_03382227 NA coding upstream 23843 3376905 ~ 3382425 (-)
CI01000043_03452739_03529381 CPNE7 coding upstream 98529 3451591 ~ 3529693 (-)
CI01000043_03539141_03543311 CASC3.L, RPL13.S, RPL13 coding upstream 186043 3539105 ~ 3543892 (-)
CI01000043_03548130_03586519 KARS coding upstream 194748 3547810 ~ 3586936 (-)
G191539 NA non-coding downstream 44080 3281072 ~ 3281308 (-)
G191538 NA non-coding downstream 53126 3272026 ~ 3272262 (-)
G191537 NA non-coding downstream 54160 3270999 ~ 3271228 (-)
G191536 NA non-coding downstream 68961 3256202 ~ 3256427 (-)
G191535 NA non-coding downstream 71116 3253967 ~ 3254272 (-)
G191569 NA non-coding upstream 74415 3427477 ~ 3427776 (-)
G191582 NA non-coding upstream 185208 3538270 ~ 3538681 (-)
G191601 NA non-coding upstream 294987 3648049 ~ 3648332 (-)
G191620 NA non-coding upstream 343509 3696571 ~ 3703622 (-)
G191627 NA non-coding upstream 353095 3706157 ~ 3712416 (-)
G191296 NA other downstream 275524 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1075908 2244688 ~ 2249480 (-)
G189881 NA other downstream 2442220 814747 ~ 883168 (-)
G192109 NA other upstream 978849 4331911 ~ 4332726 (-)
G192980 NA other upstream 2103435 5456497 ~ 5458414 (-)
G192947 NA other upstream 2240619 5593681 ~ 5618440 (-)
G193313 NA other upstream 2902510 6255572 ~ 6256279 (-)
G193922 NA other upstream 3210278 6563340 ~ 6566039 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034230 dhx38 coding NC_007118.7 CM002891.2 67748939 ~ 67798770 (+)
bowfin (Amia calva) AMCG00020521 LOC106562086,LOC106587179 coding CM030127.1 CM030127.1 23872414 ~ 23899771 (-)