CI01000043_03539141_03543311 (CASC3.L, RPL13.S, RPL13)


Basic Information

Item Value
gene id CI01000043_03539141_03543311
gene name CASC3.L, RPL13.S, RPL13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3539105 ~ 3543892 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_03539141_03543311.mRNA
AGCCATTTTCCGCTAAGGACGGTACGTGCATTTATTCCGGCTAAACATCAAGTTTATCCGCTTTAATCCTCAGTATCTCTTTATTATATGATAATCCAAATAGTCCACCTTTAAAATGTACTTTGTTTTATGTGCGTACCTGTCTGTATTGTTTGTGTTTTCTTTTCTTGAGAGAGAAAAAAGATAATTTTAGCACACGGTACCCTGTATTAGCTCTCCGCACTCGTGCGCGCTTGTTTCAGTGTTTGTTTTAAATGTTAAACCGCTCCTCATGAAGCAGTCTAAATGCCTAAATAAACGAGGTTGTTGCATTCAGCAAAACGCTTCATTAAGCGTGTTTACTGTCTCTCTGCGCCTTACTCCACACGCATGACACCACGTCAGGAAGCAGCAGAGCTTATATGAGTGTCTTAACTTGTGCTTCTGACTTTTATAATATTTGCAAGGATGTTCTGATAGCTCTCATGAACGCGCAGTTCTCTCTAAATCCAAACTACAGTGCAAAGCTTAAATTGATGCTGGTTTCACGGAGCTGCCTGCTTATTGCTGTGACATTTGTTTTGCATTAGGAGTGAACAACCATGGCTCCCAGCCGGAATGGCATGATTTTAAACCCTCACTTTCATAAAGACTGGCAGAAGAGAGTGCGCACCTGGTTCAACCAGCCTGCCAGAAAGCTCCGCAGACGCAAGGCCCGTCTGGCAAAGGCTCGCCGCATTGCTCCAAGACCAGTTTCTGGACCTCTCCGACCAGCAGTCAGGTGTCCAACCATCCGGTATCACAACAAGGTCCGTGCCGGACGTGGTTTCTCCCTGGAGGAGTTGAAGGCAGCAGGAATCAACAAAAAGGTGGCCCGCACCATTGGCATCGCCGTTGACCCTCGTCGGCGTAACCGATCCACAGAGTCTCTGCAGACCAATGTTCAGAGGCTGAAGGTGTACCGCTCCAAACTCATCCTCTTCCCGAAGAAGGCTTCTGCACCCAAGAAGGGAGACAGCACTGAGGAGGAGCTTAAGATGGCTACACAACTCACTGGACCTGTCATGCCAATCAGAAACGTGTACAAGAAAGAGAAGGCCCGCGTAATCTCAGAGGATGAAAAGAACTTCAAGGCCTTTGCCAGTCTGCGTATGGCCCGCGCCAATGCCCGTCTGTTCGGCATTCGTGCCAAGAGGGCAAAGGAGGCCGCCGAGCAGGATGTCGAAAAGAAGAAATAAACGTTAATTTGTAAGAAACTGTCAAAAAGAAATAAA

Function

symbol description
rpl13 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Used to study spondyloepimetaphyseal dysplasia. Orthologous to human RPL13 (ribosomal protein L13).

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K14323 CASC3, MLN51; protein CASC3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_03539141_03543311.mRNA True 1253 mRNA 0.47 5 3539105 3543892

Neighbor

gene id symbol gene type direction distance location
CI01000043_03452739_03529381 CPNE7 coding downstream 9412 3451591 ~ 3529693 (-)
CI01000043_03377513_03382227 NA coding downstream 156680 3376905 ~ 3382425 (-)
CI01000043_03356337_03361772 CYB5B coding downstream 175962 3356051 ~ 3363143 (-)
CI01000043_03325623_03351622 DHX38 coding downstream 186043 3325388 ~ 3353062 (-)
CI01000043_03138222_03139281 NA coding downstream 399472 3137166 ~ 3139633 (-)
CI01000043_03548130_03586519 KARS coding upstream 3918 3547810 ~ 3586936 (-)
CI01000043_03636807_03672561 NA coding upstream 92579 3636471 ~ 3672680 (-)
CI01000043_03750004_03772251 NA coding upstream 205950 3749842 ~ 3772506 (-)
CI01000043_03782397_03783190 NA coding upstream 237420 3781312 ~ 3784125 (-)
CI01000043_03912564_03929022 CHRNA7 coding upstream 368034 3911926 ~ 3929022 (-)
G191582 NA non-coding downstream 424 3538270 ~ 3538681 (-)
G191569 NA non-coding downstream 111329 3427477 ~ 3427776 (-)
G191539 NA non-coding downstream 257797 3281072 ~ 3281308 (-)
G191538 NA non-coding downstream 266843 3272026 ~ 3272262 (-)
G191537 NA non-coding downstream 267877 3270999 ~ 3271228 (-)
G191601 NA non-coding upstream 104157 3648049 ~ 3648332 (-)
G191620 NA non-coding upstream 152679 3696571 ~ 3703622 (-)
G191627 NA non-coding upstream 162265 3706157 ~ 3712416 (-)
G191826 NA non-coding upstream 192707 3736599 ~ 3737993 (-)
G191891 NA non-coding upstream 308952 3852844 ~ 3853158 (-)
G191296 NA other downstream 489241 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1289625 2244688 ~ 2249480 (-)
G189881 NA other downstream 2655937 814747 ~ 883168 (-)
G192109 NA other upstream 788019 4331911 ~ 4332726 (-)
G192980 NA other upstream 1912605 5456497 ~ 5458414 (-)
G192947 NA other upstream 2049789 5593681 ~ 5618440 (-)
G193313 NA other upstream 2711680 6255572 ~ 6256279 (-)
G193922 NA other upstream 3019448 6563340 ~ 6566039 (-)

Expression


Co-expression Network