CI01000043_04297368_04337304


Basic Information

Item Value
gene id CI01000043_04297368_04337304
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4296824 ~ 4337304 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_04297368_04337304.mRNA
CTCCGGAAAACTCGACAGTTAGATGAGAGACCAAAGGACTCGAAACTGTGGCCGTACTTTCAGGATGGCCAAAGGCGGATAGATTACGTCCTCACCTACCACGTCCAGAAGCCCCCGAGCACTCGCAAACAGAAGTCCAATTCCTGCTGCTTGAGACGTAAACGGACCAGCTCACCGTCTCAAGAGGACCCTGAACTCGCAGCTCAAGAGCAGAGGCTGGATTACCATGTGGACGACCAGCGCCTCCGCCGGGAGGAGTTTGAGGAGAACCTGTGTGAAATGGGCCTTGAGATGGAGAAAGATGAAGGGACTAAAATCCCAGGTGTGGGATTCTTGAAGATACATGCGCCTTGGGAAGTTCTTTGTCGAGAAGCAGAGTTTATGAAGCTCAAAATGCCAACAATAAAGAAATATGAAGTCAGTCCTGGAAGTGGCATTGCGGAGAAGGTCAACATGTTTATGCAGAAAGTCACTGCACCTCTGCAACCTAAAGTTGTGGCTAGCCAGATGGAAAATGAGAAACACCTCTCCTACCCATTCTCAAGAGAAAAACAGCATCTCTTTGATTTATCAGACAGAAACTCCTTCTTTGACAGCAAAACCAGGAGCTCAATAATCTTGTATGAAGAGTGGGCGAGTTACAGTATATTCTACAAGTACCAGCCCATCGGACTGATCAGGTATTATCCTGACGCTGAATGCACTGCCAGAGACAGGAAGTATTTTGGTGAGAAAGTGGGCCTGTACTTTGCCTGGCTGGGTGTGTATACTCAGATGCTAATCCCAGCAGCGGTTGTGGGTGTTATCGTGTTCCTGTACGGCTGTGCCACTGTGGACGACAATATCCCCAGCATGGAGATCTGCGACGAGAGAAACAACATCACCATGTGCCCAATGTGTGACCGAGCCTGCAGCTACTGGAAACTGGTCACGGCTTGCGGCACAGCCAGGGCCAGCCACCTGTTCGACAATGCGGCCACCGTCTTCTTCGCCATCTTTATGGCACTATGGGCCACCATGTTTATGGAGCACTGGAAGAGAAGGCAAATGAGGCTAAATTACATCTGGGACATGACCGGCTTTGAAGACACAGAGAGTCATCCTAGAGCAGAGTATGAGTTCCGTGTCATGAAGAAGTCCTTGAAGAAAGAGCAATCTCCAAAGACAGGAAATGTGAAGCTGACATGCACAGACAGAATACCAGCTTACATGACCATTATCGTCATGATGGTTTTTTTGATCTTTGTGACCTTGGCCATCGTGTTTGGTGTGGTGCTATACAGGGTCTCCATCATGACTGCCCTGCACATGAGTTCCACTCCCACTTTCCGCTCTAATATACGGGCCACCGTTAAAACCACTGGGGCTGTCATCAACCTTATTATCATCATCATCATGGATGAGGTCTATGGAGCAATTGCACGTTGGCTCACTATTATGGAGGTGCCAAAAACGGACAAAAGTTTTGAGGAGAGGCTGATCTTCAAGACATTCATACTGAAGTTTGCAAATGCATTTACCCCTATTGTGTACCTGGCGTTCTTCAGAGGCAGACTCATTGGACGCCCAGGCAAATATATCTACGTTATGGGGTCTTACCGGATGGAAGAGTGCGCCCATGCCGGCTGTCTGATGGAATTGTGCATTCAGCTCTGCATCACCATGCTTGGCAAGCAGCTCATCCAGAATAACCTGTTTGAGATTGGCATTCCGAAACTGAAGAAAATGCTCCGACAACGCAAGATAGACAAAAAGCATCAGGAAGAGCTGAACAAAACGCTTCATCGTCACGAGAAGGACCACTTCCTTGGGCCCTTTGTCGGACTCAACCCAGAGTACATGGAAATGAGAATCTGGTACACTCTTCTCAGAGGACTCAGTAAAGTGGCCGTCATTGTTAATGCGTTTGTGATCTCATTCACCTCTGACTTCATCCCACGCCTGGTCTATCAGTACATGTACAGTCCAGACGGGACTCTTCATGGCTTTGTCAATCACACCCTCTCATACTTCAATGTTAGTCACTTCCAGCCTGGCACTGAACCCATGGAGCCTCTGCACCTGGGATACCGCGTGGACGTCTGCAGGTATAAAGATTATAGGGACCCTCCATGGTCTGACACGCCATACGAGTTCTCCAGAGAATTCTGGGCCATTCTGGCGGCTCGATTCGCTTTCGTCATCGTCTTTCAGAATGTGGTAATGCTGATGAGCGACTTTGTGGATTGGCTAATCCCAGACATTCCCAAGGACATTAGCATTCAGATACACAAGGAGAGGAACCTTATCGTTGAGTTGTTCATGAAGGAGGAGAAGGGCAAGAAGAACAGGAACACCATAAGCGACCCGAGCCCGCAGCCGCTCCGCGCGCGCCCCAGCTCTCAAGCATAGAGCGGCGCTGCTCCATTATAACTCTGTGACCGGCTGAAGCAGAACGGAAAGCCTGTCGAGGACCACTGCTGCACGGATCAGTGTCGTTACAAAGAATGTTACATGACTGCCACCTCATTTGCATACCATTTTCCTTTTGTTTGTTAATGATCTTTTCTATCAGCTTCATGCAACGTCTGCAGGTAGGTTTTTTGGAAAGAGGGTTTGTATTGTTTTATCTGTTGACTGATGAATATTGGATGTAGTTTTGTGACTGCTTCAGCTAATGATCATTTTTATTTGAAAATACGATGCTTTTATAGGACTTTTAACATGAAAATGTAACATGTTTATGTTTTCGATATTGTTGGATAGGACTCTGAACCAACTCATTTAAAGTGCTTTTTAAATGATTTAATATTAGACATTTCATTCAGAATATTTCTGCTCAAGGGAATCAGCAACTATCAATATCATGCTGTTTCCTTTTTAGGTACTAAGAAGTAGTTCTGTTCTGTCATAGTAATGATCGTGTCTGTTTAGGCTTTAGTCGTCTATATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_04297368_04337304.mRNA True 2935 mRNA 0.47 19 4296824 4337304

Neighbor

gene id symbol gene type direction distance location
CI01000043_04292518_04294909 NA coding downstream 1915 4292183 ~ 4294909 (-)
CI01000043_04185319_04204509 CSNK1G1 coding downstream 91783 4185108 ~ 4205041 (-)
CI01000043_04168896_04172758 RS17, RPS17.S, RPS17 coding downstream 124066 4168871 ~ 4172758 (-)
CI01000043_03912564_03929022 CHRNA7 coding downstream 367802 3911926 ~ 3929022 (-)
CI01000043_03782397_03783190 NA coding downstream 512699 3781312 ~ 3784125 (-)
CI01000043_04486893_04491014 CCND1.L, CCND1, CCND1.S coding upstream 149297 4486601 ~ 4491988 (-)
CI01000043_04701996_04719324 TPCN2 coding upstream 364692 4701996 ~ 4719324 (-)
CI01000043_04725324_04728884 NA coding upstream 387765 4725069 ~ 4728884 (-)
CI01000043_04738890_04742485 NA coding upstream 401586 4738890 ~ 4743454 (-)
CI01000043_04821316_04858515 MMP15 coding upstream 483770 4818251 ~ 4859482 (-)
G191941 NA non-coding downstream 327482 3966947 ~ 3969342 (-)
G191938 NA non-coding downstream 337865 3958727 ~ 3958959 (-)
G191937 NA non-coding downstream 338261 3958336 ~ 3958563 (-)
G191932 NA non-coding downstream 352826 3943779 ~ 3943998 (-)
G191929 NA non-coding downstream 369345 3927266 ~ 3927479 (-)
G192118 NA non-coding upstream 15580 4352884 ~ 4353110 (-)
G192126 NA non-coding upstream 44228 4381532 ~ 4381735 (-)
G192138 NA non-coding upstream 62642 4399946 ~ 4400234 (-)
G192163 NA non-coding upstream 88162 4425466 ~ 4425793 (-)
G192243 NA non-coding upstream 202390 4539694 ~ 4540445 (-)
G191296 NA other downstream 1246960 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2047344 2244688 ~ 2249480 (-)
G189881 NA other downstream 3413656 814747 ~ 883168 (-)
G192980 NA other upstream 1119193 5456497 ~ 5458414 (-)
G192947 NA other upstream 1256377 5593681 ~ 5618440 (-)
G193313 NA other upstream 1918268 6255572 ~ 6256279 (-)
G193922 NA other upstream 2226036 6563340 ~ 6566039 (-)
G194100 NA other upstream 3093582 7494997 ~ 7498973 (-)

Expression


Co-expression Network