CI01000043_04887448_04901355


Basic Information

Item Value
gene id CI01000043_04887448_04901355
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4887448 ~ 4901687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_04887448_04901355.mRNA
ATGACACTCCTTCTACTTCTGATCATGATCTATGGCCTGGATGGTGGAGAATGTGGAGGTTGTGAAGGCAGTGGAATTCTAAGACTAACAAGTACCACAAAGGGATTTGATATTGAAATCTCATTGGAATCTGGACCCTTCATTACTGTTAATGACACTGCAGAACAATTAAGCTGTAATTCAAAAACAAATTCATGTTATATTGAGTGCTCCTATGAAGATTTTTTTGTGAACAAAGCCTCCAACGAAATAAAAGAATTACAACTGTGTGTGCAAAAGCAAAACACAAATAAAACTGCATTCGAATTCAGCATAGTAAACTATACATCACTATGTATTGTGGTGTATTGCTTGCCTGATGAAATAAAAGGCCTCTTGGAGACAAAAGAGAATCAAATGAATAGCCCAAAAGGTCTGAGAAGCATTCTCAATATTAAAAAAATGTGCCAAGAAGTGATCCTTAATGAAGCTGTTGTGGATACCTACATTAGAGTGGAGAAGTCAGCCATAGAGAGTGTTATAAATATGACTGAGCAATCCAAGAATTACACTCATGAAGATCTTTCCATGATTGTGGTTATGATGAATTTAAGCACGGCAGACGATTATGTACCAATATCCGCTCCAAGAGTATTAGGTGTTAATGAAGTTGCAGAGACATTGATCCCGGTGAAGTCTTTCCAAAACGGAAGCAAAATTGGTGTAGTTACCTACGATTCCGATCAGCATTTTAAGCTTAAACTGGGAAGTAAAATTGTTACCTCGAAAATCATACGGATTGAAGTCCCCGAACATGACTTTGTGAAATTGACCAATCGACTTAAAATTCAGTTTAAAGTTAATCACAGTTACACAAATCACACATCTAACTACACCCTGTCCTGTCAGTTCTATGATGCAAATGGTACAGTAATGGTTAATTGTTTCAATGAAAAATCATCTGAAATGCTCTTATATTACAACATATGTCATTTGATGAACTCAAGGGCAGAAGTGTCCAACAGCATCCATGTGTCTCTGAGTGGCGCTCTGTTTCTCCTCAACATCAGCTTCATGCTCAGCGAATGGGCTGCCACACTGACAGAGAAAAATTTCTGTGTGTTTATCGCTGTGATGATACACTACAGCCTGCTGAGTTGTTTCACCTGGATGGCTGTTGAAGCCTTGCATCTGTACCTTCTTCTCATCAGAGTGTTCAACATTAACATCAAACACTACATTATCAAGTTGTCCCTGATCGGATGGGGAGTCCCCGCTGTTGTTGTTGGAGGTTTGCTGTCAGTTTATAACATTCATCCTTTTTATGGCTTATACGAGATGACATTATCAGATACTAACAAAACAAACCCAGTTTGCCTGTTCATAGATCCTCTCGTCATGTATGGCGTGAACATTTCCTACTTCACCGTCATATTCTTGTTAAACGTAGGAATCCTAATCACAGTGTCCAGACAGATCTTTAAGCTACGACATGTGGGCAACAAGCCAGGCAAGATTCCAGTTTGGAAGGACACCGGCACAGTGCTGGGCCTCATGTGTCTGCTGGGTACAACTTGGGGTTTGATCTTCTTCAGCATGGGATATACCAACTACCCTATACTCTACCTGTTCTGTATCTTAAACACAATGCAAGGGTTTTGCATCTTTCTGTGGATGTGCGGTACAGCGAGGAAAAACAGAGCACAAGCATCTCAATCCAAGACTAAATCCACTGTGGACGTCTCTAAGTAATGAACTCTCATGCCATTTTCTTACTAAAACCTCTGACATGGTTTTACAAGAAGACATGTTCCAGCCTCAGCCAGTGACCCACATAAATGTAGCCTGGGTTATGTAAAAATGACACTCACCACAACATGCTAACAAGAAATGGCAATCTTGAGAAAGTGTCGTCAGCAGTTGAAGAGAACTTCCTTTGCACTGATAACAGCACTGCATTAAAGAAAATTCAGTTCCCTCTTTGTAACTGTACACATACTAAAATCTTGATCTATGATCTATCATATCTCTTCGTAAAGCTACTTATCGTATCTAACAAAAATAACAAAAGCTGTGATTTGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_04887448_04901355.mRNA True 2063 mRNA 0.39 11 4887448 4901687

Neighbor

gene id symbol gene type direction distance location
CI01000043_04873413_04879547 NA coding upstream 7846 4873413 ~ 4879602 (+)
CI01000043_04818939_04819238 NA coding upstream 66779 4818939 ~ 4820669 (+)
CI01000043_04813811_04816237 NA coding upstream 70705 4813363 ~ 4816743 (+)
CI01000043_04746456_04753978 DHCR7 coding upstream 133084 4746022 ~ 4754364 (+)
CI01000043_04471833_04474152 NA coding upstream 412930 4471629 ~ 4474518 (+)
CI01000043_04902104_04912376 NA coding downstream 417 4902104 ~ 4912376 (+)
CI01000043_05025912_05042461 IPO7 coding downstream 124225 5025912 ~ 5042676 (+)
CI01000043_05088157_05094871 BCO1L coding downstream 186470 5088157 ~ 5095162 (+)
CI01000043_05099471_05111989 BCO1 coding downstream 194038 5095725 ~ 5112379 (+)
CI01000043_05114193_05114497 BOLA3 coding downstream 212506 5114193 ~ 5114497 (+)
G192416 NA non-coding upstream 6940 4880199 ~ 4880508 (+)
G192385 NA non-coding upstream 59356 4811329 ~ 4828092 (+)
G192356 NA non-coding upstream 122794 4764183 ~ 4764654 (+)
G192327 NA non-coding upstream 193064 4694066 ~ 4694384 (+)
G192323 NA non-coding upstream 198369 4688831 ~ 4689079 (+)
G192455 NA non-coding downstream 93222 4994909 ~ 4995144 (+)
G192461 NA non-coding downstream 105739 5007426 ~ 5007733 (+)
G192373 NA non-coding downstream 145506 5047193 ~ 5050199 (+)
G192466 NA non-coding downstream 152508 5054195 ~ 5054424 (+)
G192469 NA non-coding downstream 154672 5056359 ~ 5056568 (+)
G191644 NA other upstream 536834 4307948 ~ 4350614 (+)
G191670 NA other upstream 977482 3903233 ~ 3909966 (+)
G190272 NA other upstream 2443738 2441862 ~ 2443710 (+)
G190241 NA other upstream 3194969 1683556 ~ 1692479 (+)
G192454 NA other downstream 91326 4993013 ~ 4993356 (+)
CI01000043_05169578_05171795 CLEC3A other downstream 267918 5169578 ~ 5171848 (+)
G192489 NA other downstream 565630 5467317 ~ 5552624 (+)
G193125 NA other downstream 1304001 6205688 ~ 6210893 (+)

Expression


Co-expression Network