CI01000043_04998580_05006966 (TMEM41B)


Basic Information

Item Value
gene id CI01000043_04998580_05006966
gene name TMEM41B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4997896 ~ 5006966 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_04998580_05006966.mRNA
ATGAAGTTGTCATCTGAACTGAACAGCACCGAAGAAGAGGACCACTCAGTCACAGGTCACCGGTATCCTGAGAAAATCATCATGGCCAAGAAGAGAGGCGGAAACCGTGAGACAGAGAGCAGTCCTCTGGTTGAGCAGGAACCGAGGCCCTCCAACGAAACTCCAGTCCACAAAGGAGCCCAGTCACCAGGAGGAGCCTCTGCACGCATGTCAATCCTCCTCCTCGTCGCTATCTTTGCCTGTTCTGCTTGCGTCATGTATCTAGTGTTCAGAAATTTCCCAGAGCTGAGCGAAGACGAGAGGGAAAAAATCAAAATTCCTAAGGACATGGAGGATGCCAAGGCATTGGGCACAGTGCTGTCTAAATACAAGGACACATATTACACCCAAACGTTTGCCATCCCAGGCTCCATATTCCTCAGTATACTGTCTGGTTATCTCTACCCTTTTCCACTTGCTCTTTTCCTCGTCTGTCTGTGTTCAGGCCTTGGAGCATCTTTTTGCTATATGCTGTCTTATTTAGTCGGGAGGCCGATGGTCTACAAGTACCTCACAGAGAGAGCTCAGAAATGGTCACAACAGGTGGACAAGCACAGAGAGCACCTCATTAATTACATCATTTTTTTGAGAATAACTCCCTTCCTTCCAAACTGGTTCATCAACATCACCTCACCGGTCATTAATGTACCTCTGGGTGTCTTCTTCCTGGGCACTTTTCTTGGAGTGGCTCCTCCATCCTTTGTGGCGATAAACGCAGGTACGACACTGTACAAGCTGACCACGGCTGGCGAGGCCGTGTCCTGGAACTCTCTTATCGTCTTGGGGGTTTTAGCTGTTGTCTCCATCCTGCCCGTCTGCTTTCAGAAGAAACTCCAGCAGAAGCTTGAATAGAGATCTCCACCCCTGCTTGATTCAACTCAGGAATTATACTGGTCCTCTAAACTTCTCCTTGCTTTCTTCTCTTCCTTTATGCATGTACGGCAAACGCTCATTTCGTCATACGACGGGCAGCCAGTGGCTGTCAGGACTGGCCTTCCATTGTTTGGACAGGACTTTCATGGGATGAAAATTCTATCATCACTAATTATCTATCATCATTAGCGTCAAGCAATATTTTCCACATCAACGTCTTCAGTCAGAGGATTTGAAATTTCTCAATATTTTCCGCAAAACGGCAATGATTAATGTGTGATACACTGGAAGAGACATTTTCACTCCCTCTGAAGTTGCTGAGCTAAAATGGAAAGTGCCAACTTCGACTTCTTTGGTCTTACAGCTAATTTAATATTCAAATGTGTTATGAAACCTTTCGAGGGTGTGCTTTGTGGGTTTACGGTTTTTTTTCTAACTCTTATTTCTTATGCCAGCTGAGACTGCAGTTGGGATCTAAATGGACGATCTCTTAACAGTGCCGTGCGTACTGCTGCCGACTGTAGATGATAGTGCTTAGCTCTTGTTGTAGACCTAAAAACTGATAAATACAGATGATGCCACATTAGTATTACAGATCAAGACTGTAGATTGAATTTAGAAAGGTTTTGCCTTAATATAACAGGTTACTTGAAGTAAAATAAA

Function

symbol description
tmem41b Acts upstream of or within motor neuron axon guidance. Predicted to be located in mitochondria-associated endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM41B (transmembrane protein 41B).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_04998580_05006966.mRNA True 1575 mRNA 0.45 8 4997896 5006966

Neighbor

gene id symbol gene type direction distance location
CI01000043_04928149_04970788 DENND5A coding downstream 27108 4928134 ~ 4970788 (-)
CI01000043_04920619_04925317 FAM60AL, FA60A coding downstream 72579 4920394 ~ 4925317 (-)
CI01000043_04821316_04858515 MMP15 coding downstream 138414 4818251 ~ 4859482 (-)
CI01000043_04738890_04742485 NA coding downstream 254442 4738890 ~ 4743454 (-)
CI01000043_04725324_04728884 NA coding downstream 269012 4725069 ~ 4728884 (-)
CI01000043_05047820_05058629 NA coding upstream 40854 5047820 ~ 5058629 (-)
CI01000043_05064629_05069974 NA coding upstream 57648 5064614 ~ 5069974 (-)
CI01000043_05075648_05078780 NA coding upstream 68682 5075648 ~ 5078796 (-)
CI01000043_05220978_05232290 DKK3A coding upstream 213347 5220313 ~ 5232290 (-)
CI01000043_05447820_05448121 NA coding upstream 440442 5446816 ~ 5450393 (-)
G192785 NA non-coding downstream 4923 4952748 ~ 4992973 (-)
G192776 NA non-coding downstream 111477 4886178 ~ 4886419 (-)
G192772 NA non-coding downstream 116976 4880680 ~ 4880920 (-)
G192764 NA non-coding downstream 131511 4865991 ~ 4866385 (-)
G192654 NA non-coding upstream 33175 5040141 ~ 5044495 (-)
G192817 NA non-coding upstream 102442 5109408 ~ 5113532 (-)
G192812 NA non-coding upstream 104877 5111843 ~ 5112946 (-)
G192820 NA non-coding upstream 112086 5119052 ~ 5122115 (-)
G192813 NA non-coding upstream 153102 5160068 ~ 5160451 (-)
G192109 NA other downstream 665170 4331911 ~ 4332726 (-)
G191296 NA other downstream 1948032 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2748416 2244688 ~ 2249480 (-)
G189881 NA other downstream 4114728 814747 ~ 883168 (-)
G192980 NA other upstream 449531 5456497 ~ 5458414 (-)
G192947 NA other upstream 586715 5593681 ~ 5618440 (-)
G193313 NA other upstream 1248606 6255572 ~ 6256279 (-)
G193922 NA other upstream 1556374 6563340 ~ 6566039 (-)
G194100 NA other upstream 2423920 7494997 ~ 7498973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location