CI01000043_05185874_05196576 (USP47)


Basic Information

Item Value
gene id CI01000043_05185874_05196576
gene name USP47
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5185874 ~ 5196597 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_05185874_05196576.mRNA
GGTATTTTTTGGAGTTGCAGGCAGAGTATTTTTGAGGAGATGCAGAAGAGGTTCTCACAGATTGAAAGTGCAGCGGAGGAGCCGAGAGTGCTGTGTATAGTGCAGGACACCACCAATGCCAAGACTGTCAATGAGAGGCTGACGATCAACCTGCCTGCCTCCACCACCGTCAACAAATTCTTCGAGGATGTGTCTCACAAGGCTGGATATGTGAATGGCACTTTCTGCCTGGCATGGGCCAGTGCTGGCGACATGGCTCCTCTGGACCAGGCCAGTGAGATGTCCCTGGTGTTGTCCGGTTTTGAGGCGGGGAAGAAGAATTTCCTGCAGCTTACAGACAAGGATGGGGAGCAGCCTCAGATCGCTTCAGATGAATCTGGCACAGCGGACAGCAGTGGTCTTGATGACAGCTCTCAAGATCGCTTTATTGGACCCTTACCGCGGGACGGTACTGTGGGCTGCAGCAGTGACTACAGCAGCCCTAGTTACTCGTACTCCTCCATACTCAACAAATCAGAGACAGGTTATGTTGGTTTGGTCAACCAAGCAATGACCTGTTACCTGAACAGCCTCCTGCAGACCCTGTTCATGACCCCTGAGTTCAGGAATGCACTCTACAATTGGGAGTTTGAGGATTCCGAGGAGGATCCAGTCACCAGTATCCCATACCAGCTCCAGAGGCTGTTCGTTCTCCTGCAGACAAGTAAGAAGCGCGCCATCGAGACCACAGACGTGACCCGCAGCTTTGGCTGGGACAGCAGTGAGGCCTGGCAGCAGCATGACGTCCAGGAGCTTTGCAGAGTCATGTTTGATGCACTAGAGCAGAAATGGAAACAGACCGAGCAGGCTGACCTGATCAACCAGCTTTACCAGGGCAAACTGAAGGACTATGTGCGCTGTTTGGAGTGTGGCTATGAGAGCTGGAGGATTGACACATACTTGGACATCCCTCTGGTCATCAGGCCCTTCGGGGCCAGCCAGGTTTTTGGTAGCGTGGAAGAAGCCCTGCAGGCCTTCATCCAGCCTGAGACTCTCGACGGGCCCAACCAGTACTTCTGTGAGCGCTGCAAAAAGAAATGTGACGCCCGCAAAGGCCTGAGATTCCTCCATTTCCCATACCTGCTGACTCTGCAGCTGAAACGCTTTGACTTTGATTACACCACTATGCACCGCATTAAACTCAATGACCGCATGACCTTCCCTGAGGAGCTGGACATGAGCCCTTTCATCGACGTCGAGGATGAGAAATCACCTCAGACAGAGAGCTGCACTGACAGTGGAGCGGAGAATGAAGGAAGCTGCCACAGTGACCAGATGAGCAATGATTTCTCCACAGATGATGCCGTGGACGAGGGCATCTGTCTGGATAACACCAGCAGCGCAGAGCGGGTGCTCAAACCAAAGAGCTCTTTGACCTTTGAACTCTTCTCGGTCATGGTGCATTCTGGGAGTGCTGCAGGCGGGCACTACTATGCCTGCATCAAGTCCTTCAGTGACAGCCAGTGGTACAGCTTCAACGACCAGCACGTCAGCAAGGTCAGCAGGCTAGCATCAATCTAAAAGAAAAAGTTCAGCTGAAAA

Function

symbol description
usp47 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination and regulation of protein stability. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol and nucleus. Orthologous to human USP47 (ubiquitin specific peptidase 47).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K11857 USP47; ubiquitin carboxyl-terminal hydrolase 47

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_05185874_05196576.mRNA True 1581 mRNA 0.53 12 5185874 5196597

Neighbor

gene id symbol gene type direction distance location
CI01000043_05169578_05171795 CLEC3A coding upstream 14026 5169578 ~ 5171848 (+)
CI01000043_05119129_05131257 VAT1L coding upstream 54617 5119129 ~ 5131257 (+)
CI01000043_05114193_05114497 BOLA3 coding upstream 71377 5114193 ~ 5114497 (+)
CI01000043_05099471_05111989 BCO1 coding upstream 73495 5095725 ~ 5112379 (+)
CI01000043_05088157_05094871 BCO1L coding upstream 90712 5088157 ~ 5095162 (+)
CI01000043_05261569_05299427 MICAL2, MICAL2A coding downstream 64972 5261569 ~ 5299427 (+)
CI01000043_05334800_05345427 PARVA, PARVAB coding downstream 138203 5334800 ~ 5345747 (+)
CI01000043_05368751_05369299 NA coding downstream 171748 5368345 ~ 5369636 (+)
CI01000043_05388826_05406208 NA coding downstream 191055 5387652 ~ 5406884 (+)
CI01000043_05410812_05446376 TEAD1B, TEAD1, TEAD1.S coding downstream 214070 5410667 ~ 5446407 (+)
G192499 NA non-coding upstream 24971 5160676 ~ 5160903 (+)
G192495 NA non-coding upstream 25430 5160067 ~ 5160444 (+)
G192479 NA non-coding upstream 107276 5075742 ~ 5078598 (+)
G192478 NA non-coding upstream 114777 5070878 ~ 5071097 (+)
G192529 NA non-coding downstream 34338 5230935 ~ 5231163 (+)
G192493 NA non-coding downstream 250629 5447226 ~ 5450159 (+)
G192581 NA non-coding downstream 370578 5567175 ~ 5567801 (+)
CI01000043_05733124_05733576 NA non-coding downstream 397070 5730909 ~ 5734169 (+)
G193100 NA non-coding downstream 725168 5921765 ~ 5922037 (+)
G192454 NA other upstream 192518 4993013 ~ 4993356 (+)
G191644 NA other upstream 835260 4307948 ~ 4350614 (+)
G191670 NA other upstream 1275908 3903233 ~ 3909966 (+)
G192489 NA other downstream 270720 5467317 ~ 5552624 (+)
G193125 NA other downstream 1009091 6205688 ~ 6210893 (+)
G193344 NA other downstream 1113555 6310152 ~ 6310538 (+)
G193422 NA other downstream 1447544 6644141 ~ 6648342 (+)
G193584 NA other downstream 1735379 6931976 ~ 6934847 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034202 usp47 coding NC_007118.7 CM002891.2 65398161 ~ 65464416 (+)
bowfin (Amia calva) AMCG00007044 usp47 coding CM030123.1 CM030123.1 1599935 ~ 1626659 (-)