CI01000043_07196847_07199775 (PABPN1L)


Basic Information

Item Value
gene id CI01000043_07196847_07199775
gene name PABPN1L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 7196847 ~ 7201422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000043_07196847_07199775.mRNA
GAGCTGGACGCGATTCAAACTCGTGTGCTGGAAATGGACGAGTCTGACATGCAGTATGAGGTAGAGAGACAGTTTCCCTACAGCCCTCAGGCAGGATTGTTCTTCAGTATGACCCATGAAGAGAGAATAGATTCTGACAGGAGATCAATCTATGTGGGAAACGTGGATTATGGAGCAACCGCAGACGAACTGGAGATGTACTTTAACGGCTGTGGCCACGTAAACAGAGTTACAATCCCGTATAATAGATTCACAGGCCATCCAAAAGGTTTCGCCTACATTGAGTTCTCCGAGAGGGAGTCGGTGAGGACCGCCATGACTTTAGATGAAACCCTATTCAGAGGGCGTGTCATTAAGGTATTGCCAAAAAGAACAAACATTCCAGGTTTCAGGACTACAGATACAAACTTGCGTGGAGGCTGGTCCCGAGGACGAGGTTTCCGTGCCTCAAGATTTTACAACCCATTCAGAGGCTGCCACTTCATTAGGGAAAATGGACGAGCTCATCCATGGGTTGATTCTTTTTGATATTCATTTTTCTGTTATCTTCAAAGCACTTCTTGGTGCTAATTAAAGTACATTTCAGTAGTTGTATGAAGGGAGCTCAGTTTAGTATTATTATGATTATTTTTTTGTATGTGTGTTTGTAGCTTATATGACACTACAGAAAGCGGAGACTTGATTTCTATTGAGTGGTTACTGTTTTATTTGTATTTTATACAATTTCTTTAATATGCCATGCCTGTGGGAGGCTGAGATGTCTTGTGAATTTCAGTACTTTGTCTATTTTTGCTTTTTCAGTGCTTAGACTTCATCACTGTAA
>TU219875
TTGCCTGTCCAATATGGGCCAAATTTTAATTACGTAAACAATCTCACAAAAAAAAATTTTTCTTGTGGTGTGACTGTAGCCATAGCATCTCCAGTGTTGATTTCCTTGTAATGAATCTGTTTTTTGTTTGCTATGAAATACAAATCTGTGACAGGAGGAAACCATTTAATTTGAAGCTCTTTGTGCACTAGGTATTGCCAAAAAGAACAAACATTCCAGGTTTCAGGACTACAGATACAAACTTGCGTGGAGGCTGGTCCCGAGGACGAGGTTTCCGTGCCTCAAGATTTTACAACCCATTCAGAGGCTGCCACTTCATTAGGGAAAATGGACGAGCTCATCCATGGGTTGATTCTTTTTGATATTCATTTTTCTGTTATCTTCAAAGCACTTCTTGGTGCTAATTAAAGTACATTTCAGTAGTTGTATGAAGGGAGCTCAGTTTAGTATTATTATGATTATTTTTTTGTATGTGTGTTTGTAGCTTATATGACACTACAGAAAGCGGAGACTTGATTTCTATTGAGTGGTTACTGTTTTATTTGTATTTTATACAATTTCTTTAATATGCCATGCCTGTGGGAGGCTGAGATGTCTTGTGAATTTCAGTACTTTGTCTATTTTTGCTTTTTCAGTGCTTAGACTTCATCACTGTAAATAAAAACAATATTATCACGAGTCCTTTTATGAAACACAAATTAATTCTTTATTTTCACCTAACAAACAATACACAATGGACACTGATGTAAATATATATATACACAACTTTAAAGAGAGGATTTCAGCAGGCCTGCACCATCATAGCTGAAACTATACTGTCAAAAGCCCTGCGGAGAGAGAAAAATATTATATTAGAGTATCAGTTGCTGTATCAAACACTCCAAATGTGTGTTTTCACCAAAGAAACTTACTTTGATTGAATTGGATCTCCGGGATTGTAGAATGGGTTACACATTACATCAGTGAAGGAGTTGTGCAACTTTCTAAACATCTGAGGAAAGAAAGAGCTCTTAACTCATCATTACAACCCATGTGACTGACACATCTCGCCTCTTTTTTTGTTGTTACATAGGTGGAATGTGTACATTTTGCAACTCACACTTCTGATTTCGTTGTCTCGCAGAGATGTGTTGGAAGAATCGACAACAATCACAAACTTCACCTTAGAGTTTGTCACATAGCCATATCTGTAATTCTTGTTAAGATTAACATGTTGTGCATTAGAAAGCAGCCCATCTTAAAGGGATAGTTCACCCCAAAATGAAAATTCTGTCATTTACTCTGAATCATGTCATTCCAAACTCCTTCTGTGGGACACAAAATAAGATATTTTGGATAATGTTGATAACTAAAAAAACTTTGGTGATCAATGACTTCCATTGTGCGATATTTCTTGATATCTTTTATCTTACACAGAATAAAAGTCATACCATTTTGGGTGAACTATACATACATACACTTTATATCTCACTTTATTAAGCAATGTCTTTGCTGCTGACATTCAATGATCCAATTCAATCATACTAATAATCAAAAATAACTTTAGATAAACCTCACATTTTTGTGTTTTTTTTTTTTTATTGCAGAAGTAAGAGTGTTGAACTTGAGGCTTATTTATGTGATATTTTGACAAAATCTAACTTTTTTGGGGGGTTGGGGGTTCTTATTAAAAAAAACAAGCCCAGCCCAGGTGAGAAAAAGTAACATTACTTTGCATTAAAAATAATTTAGTAACACAATTAGTTACTTTTTGCAACTCAATATTGTACCACATTACTTTTAAAAGTAACACTGAGTCACAATGAGAAAGAAAAGACGATCACAACTGTCGACTTTAAGGATACACTTTGTAGTCCTCAGTTGGATAGAGGAGTCCCAGATAAAGCTCCCTCTGGTCGGCCAAGGCTTTGCCCACACCGGAGATCTTCTCCTCCACTACGTCCAGAGAAGTGTGCACTGTGTAGTGAAACTTGAGTTCCCCCTGTGTAGGAACGCTCCGAATGTACAGG

Function

symbol description
pabpn1l Predicted to enable RNA binding activity. Orthologous to human PABPN1L (PABPN1 like, cytoplasmic).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000043_07196847_07199775.mRNA False 823 mRNA 0.42 6 7196847 7200070
TU219875 True 2009 lncRNA 0.36 2 7199159 7201422

Neighbor

gene id symbol gene type direction distance location
CI01000043_07175996_07189256 CBFA2T3 coding upstream 7035 7175864 ~ 7189812 (+)
CI01000043_07036554_07036979 NA coding upstream 159181 7035931 ~ 7037666 (+)
CI01000043_06911881_06926878 SPG7 coding upstream 269547 6911533 ~ 6927300 (+)
CI01000043_06844060_06880471 NA coding upstream 316349 6843771 ~ 6880498 (+)
CI01000043_06825336_06826471 NA coding upstream 369239 6824410 ~ 6827608 (+)
CI01000043_07204216_07216573 GALNS coding downstream 4146 7204216 ~ 7217151 (+)
CI01000043_07243729_07244723 NA coding downstream 43659 7243729 ~ 7245140 (+)
CI01000043_07246033_07248353 APRT coding downstream 45688 7245758 ~ 7249123 (+)
CI01000043_07259451_07296086 NA coding downstream 58988 7259058 ~ 7297207 (+)
CI01000043_07301810_07355783 PIEZO1 coding downstream 101740 7301810 ~ 7355783 (+)
G193661 NA non-coding upstream 46117 7068547 ~ 7150730 (+)
G193600 NA non-coding upstream 177760 7018544 ~ 7019087 (+)
G193582 NA non-coding upstream 214724 6981657 ~ 6982123 (+)
G193595 NA non-coding upstream 218199 6978409 ~ 6978648 (+)
G193594 NA non-coding upstream 218665 6977931 ~ 6978182 (+)
G193712 NA non-coding downstream 208562 7408632 ~ 7445809 (+)
G193641 NA non-coding downstream 263477 7463547 ~ 7469047 (+)
G193662 NA non-coding downstream 270120 7470190 ~ 7471580 (+)
G193636 NA non-coding downstream 291867 7491937 ~ 7597959 (+)
G193773 NA non-coding downstream 494412 7694482 ~ 7720234 (+)
G193584 NA other upstream 262000 6931976 ~ 6934847 (+)
G193422 NA other upstream 548505 6644141 ~ 6648342 (+)
G193344 NA other upstream 886309 6310152 ~ 6310538 (+)
G193125 NA other upstream 985954 6205688 ~ 6210893 (+)
G192489 NA other upstream 1644223 5467317 ~ 5552624 (+)
G193650 NA other downstream 315454 7544525 ~ 7544607 (+)
CI01000043_07667056_07673079 NA other downstream 468485 7665689 ~ 7673725 (+)

Expression


Co-expression Network