G189236


Basic Information

Item Value
gene id G189236
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 206979 ~ 208995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU214941
GTTTTATTAATTCATTTATTTAGTCTTGATTTATTCGGAAGGTTGAGTCGATCTCATGCTGTGTCTCCATACGAAGACAGGTGTTTGTTGGCTTCAGGCAGAATAAACAGTACAAATCAGATTCAAGTTACACGTACTGAACAGAAGAAATACATGACAATGTAGACTGAAGAGAGAAAGAGTCAGAATGAGAGTAGATACACGAAGATGAAATCCTGGTAACAATTTACAATAAGGTGTCATGTGTGTTAACATTAGTTAATGCATTATCTAACATTAACTAACAACAAGCAAATTTGGACCACTTTATTTTACAGTATCCTTGTTACATGTTACATGTACATACTATAGTATTAACAGTAAATTACACAAATTCAAGCAACTAACCCTAAACCTATATTAAGAAAATGTTCATTGTTAATATTGTATAATTACACTGTAACAAGGACACTTTAAAGAGTAACCAAATGATTTTATAGCATTTATTAACCTGTGTTAATGTTAGTAAATAAAAAATTGTTTATGTTTGTTCAGAGTGCATTAACCAATGTTAAAACAAAATGTAATAGTAAATGTTGAAATGAACATTACCTAATAAATTCTGTAGAAGTATCGCTCATTGTTGGTTTATGTTAAATAACGTAGTCAACAAATGTTAAGAAATGCAACCTCATTGTAAAGTCATACCAAAATCCCCAACTAGAGTTTCACCTCAGTCCATTGAAGAAAAACACCAAAGCATCTTGCTTGTTTTGCATCTGATCTTGAGAAAGATCTGTTTCTTTCCTGCCTTAAAACACAAAAAGCTTCTGAGGCAAAGCACAAGAGCTTTGACAACAGCTTTATAGAAATATTTCTGCAGCAGCAGCCTTTCGAATAACATTGAGGCGAGAGTTGCATTCATTTCTGAAAAGCTTGAAAAGCGTATAGTTACTCATTGTAACCAACCACAGGACACCATACCACAGACAGAGAACTTTCTGACAAAATCCATCGCTTTAGAAAAGAAGGGCAAAATGTTTTTGAGGCCAAATTTACGATTACACAGCTTGAGTTTTTTTACTCACAGCCGACCTCAAAAAAAGCTTCTAAAAATAAACATCTCCAATAATGGCCATTGAGCTCAATTGACAGAATAACACTAATAAAGAACTAAGCCAAAGCAAACCTGTATAATAAAAGTGTGATTCTCAAGGAAGTTTGCAACAGGTAGTAAAGCCAAACCTTACAGAGGAAACTCTCCATTCTGGCATCATATAATCATATAATGACCTAAGTGAATAGTTTATTAAAAAATGCTTAAGATTTAAAAAACATAAAATAAAATGAAACCCTAAAACCCTCTAAAAATATACACTACCGCTTATAAGTTTGGAGTCGGTAAGATCTTTTAATGTTTTTGAAAGAAGTCTCTTATGTTCATCAAGGCTGCATTTATTTGATCAAAAATACAGTAGAAACAGTGAAATATTATTAGGATTTAAAAGAAATATTTTCTATGTGAATATATTTTAAAAAGTAATTTATTCCTGTGATGCAAAGCTGAATTTTCAGCATCATTACAGTCTTCAGTGTCACATGATTCTTCAGAAATCATTCTAATATGCTGATTTTCTGCTGAAGAAACATTTCTTAACATCATCAATAGTGAACACAGTTGTGTCGCTTCATATTTTTGTGGATACCGTGACACTATCATTCAAAAGTCAAGGGTAAGATTTTTTTTTAAAGAAAATAATACTTCAGTAATATTTTTATTCAGCAAGGACGTATTAAATTGATCAAAAGTGACAGTAAAGACATTTATATTCATGCTGTTTATTGGAACTTTGTTCAAAGAATCCTGAAAAAAAAAAAAAAAAAAATGTATCACAGTATCCACAAAGATATGAAGCCGCACAACTGGGTTCAACATTGATAAGAACCATTATTAATAATCGAGCACCAATATTAATAATGGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGAATCATGTGACACTGAAGACTG
>TU214942
GTTTTATTAATTCATTTATTTAGTCTTGATTTATTCGGAAGGTTGAGTCGATCTCATGCTGTGTCTCCATACGAAGACAGGTGTTTGTTGGCTTCAGGCAGAATAAACAGTACAAATCAGATTCAAGTTACACGTACTGAACAGAAGAAATACATGACAATGTAGACTGAAGAGAGAAAGAGTCAGAATGAGAGTAGATACACGAAGATGAAATCCTGGTAACAATTTACAATAAGGTGTCATGTGTGTTAACATTAGTTAATGCATTATCTAACATTAACTAACAACAAGCAAATTTGGACCACTTTATTTTACAGTATCCTTGTTACATGTTACATGTACATACTATAGTATTAACAGTAAATTACACAAATTCAAGCAACTAACCCTAAACCTATATTAAGAAAATGTTCATTGTTAATATTGTATAATTACACTGTAACAAGGACACTTTAAAGAGTAACCAAATGATTTTATAGCATTTATTAACCTGTGTTAATGTTAGTAAATAAAAAATTGTTTATGTTTGTTCAGAGTGCATTAACCAATGTTAAAACAAAATGTAATAGTAAATGTTGAAATGAACATTACCTAATAAATTCTGTAGAAGTATCGCTCATTGTTGGTTTATGTTAAATAACGTAGTCAACAAATGTTAAGAAATGCAACCTCATTGTAAAGTCATACCAAAATCCCCAACTAGAGTTTCACCTCAGTCCATTGAAGAAAAACACCAAAGCATCTTGCTTGTTTTGCATCTGATCTTGAGAAAGATCTGTTTCTTTCCTGCCTTAAAACACAAAAAGCTTCTGAGGCAAAGCACAAGAGCTTTGACAACAGCTTTATAGAAATATTTCTGCAGCAGCAGCCTTTCGAATAACATTGAGGCGAGAGTTGCATTCATTTCTGAAAAGCTTGAAAAGCGTATAGTTACTCATTGTAACCAACCACAGGACACCATACCACAGACAGAGAACTTTCTGACAAAATCCATCGCTTTAGAAAAGAAGGGCAAAATGTTTTTGAGGCCAAATTTACGATTACACAGCTTGAGTTTTTTTACTCACAGCCGACCTCAAAAAAAGCTTCTAAAAATAAACATCTCCAATAATGGCCATTGAGCTCAATTGACAGAATAACACTAATAAAGAACTAAGCCAAAGCAAACCTGTATAATAAAAGTGTGATTCTCAAGGAAGTTTGCAACAGGTAGTAAAGCCAAACCTTACAGAGGAAACTCTCCATTCTGGCATCATATAATCATATAATGACCTAAGTGAATAGTTTATTAAAAAATGCTTAAGATTTAAAAAACATAAAATAAAATGAAACCCTAAAACCCTCTAAAAATATACACTACCGCTTATAAGTTTGGAGTCGGTAAGATCTTTTAATGTTTTTGAAAGAAGTCTC
>TU214943
TGCTGATTTTCTGCTGAAGAAACATTTCTTAACATCATCAATAGTGAACACAGTTGTGTCGCTTCATATTTTTGTGGATACCGTGACACTATCATTCAAAAGTCAAGGGTAAGATTTTTTTTTAAAGAAAATAATACTTCAGTAATATTTTTATTCAGCAAGGACGTATTAAATTGATCAAAAGTGACAGTAAAGACATTTATATTCATGCTGTTTATTGGAACTTTGTTCAAAGAATCCTGAAAAAAAAAAAAAAAAAAATGTATCACAGTATCCACAAAGATATGAAGCCGCACAACTGGGTTCAACATTGATAAGAACCATTATTAATAATCGAGCACCAATATTAATAATGGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGAATCATGTGACACTGAAGACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214941 False 2017 lncRNA 0.32 1 206979 208995
TU214942 False 1413 lncRNA 0.33 1 206979 208391
TU214943 True 413 lncRNA 0.31 1 208583 208995

Neighbor

gene id symbol gene type direction distance location
CI01000043_00176126_00193756 NA coding upstream 12793 176076 ~ 194186 (+)
CI01000043_00174845_00175959 NA coding upstream 30914 172295 ~ 176065 (+)
CI01000043_00093397_00132783 SIPA1 coding upstream 73506 92844 ~ 133473 (+)
CI01000043_00040385_00051009 RASGRP2 coding upstream 155970 40327 ~ 51009 (+)
CI01000043_00372873_00405272 CACNB2, CACNB2A, CACB2 coding downstream 163878 372873 ~ 405425 (+)
CI01000043_00449493_00494730 MYOM1B, MYOM1 coding downstream 240498 449493 ~ 494730 (+)
CI01000043_00529899_00530472 NA coding downstream 320853 529848 ~ 530885 (+)
CI01000043_00613106_00620046 METTL4 coding downstream 404111 613106 ~ 620487 (+)
CI01000043_00670862_00685333 ACER2 coding downstream 460498 669493 ~ 686239 (+)
G189243 NA non-coding upstream 69965 79395 ~ 137014 (+)
G189240 NA non-coding downstream 1444 210439 ~ 215709 (+)
G189262 NA non-coding downstream 19825 228820 ~ 229240 (+)
G189245 NA non-coding downstream 25134 234129 ~ 235612 (+)
G189296 NA non-coding downstream 91809 300804 ~ 347407 (+)
G189334 NA non-coding downstream 142084 351079 ~ 351447 (+)
G190241 NA other downstream 1474561 1683556 ~ 1692479 (+)
G190272 NA other downstream 2232867 2441862 ~ 2443710 (+)
G191670 NA other downstream 3694238 3903233 ~ 3909966 (+)
G191644 NA other downstream 4098953 4307948 ~ 4350614 (+)
G192454 NA other downstream 4784018 4993013 ~ 4993356 (+)

Expression


Co-expression Network