G189340


Basic Information

Item Value
gene id G189340
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 413873 ~ 414700 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU215056
GAGTTTTCTCTGTAAAGGCTGGTAGGAACAGACTTCTTTTAGACTCCAGCTGTAGGTCATGTTGGGCCTTTGACCCAGTCCACTGCAGGGAGCGTCTAATAATATCCGGTCAAAACTCTCCTCAGGATATGGGGGACCATCAACAATGTATTCCTGAGCGGGGTCGGAGCTCACAGCATGTATGCTGTTACAGCAATATGCTTTAATACAGTCCAACTTCAGCATCTTTGCATTCTGAATTATCTTTTCCATTTTGGATCTGATTTTT
>TU215058
GAGTTTTCTCTGTAAAGGCTGGTAGGAACAGACTTCTTTTAGACTCCAGCTGTAGGTCATGTTGGGCCTTTGACCCAGTCCACTGCAGGGAGCGTCTAATAATATCCGGTCAAAACTCTCCTCAGGATATGGGGGACCTGCACTGTATTCCTGAGCGGGGTCGGAGCTCACAGCATGTATGCTGTTACAGCAATATGCTTTAATACAGTCCAACTTCAGCATCTTTGCATTCTGAATTATCTTTTCCATTTTGGATCTGATTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215056 False 268 lncRNA 0.44 2 413873 414700
TU215058 True 265 lncRNA 0.45 2 413873 414700

Neighbor

gene id symbol gene type direction distance location
CI01000043_00372873_00405272 CACNB2, CACNB2A, CACB2 coding upstream 8448 372873 ~ 405425 (+)
CI01000043_00176126_00193756 NA coding upstream 219687 176076 ~ 194186 (+)
CI01000043_00174845_00175959 NA coding upstream 237808 172295 ~ 176065 (+)
CI01000043_00093397_00132783 SIPA1 coding upstream 280400 92844 ~ 133473 (+)
CI01000043_00040385_00051009 RASGRP2 coding upstream 362864 40327 ~ 51009 (+)
CI01000043_00449493_00494730 MYOM1B, MYOM1 coding downstream 34793 449493 ~ 494730 (+)
CI01000043_00529899_00530472 NA coding downstream 115148 529848 ~ 530885 (+)
CI01000043_00613106_00620046 METTL4 coding downstream 198406 613106 ~ 620487 (+)
CI01000043_00670862_00685333 ACER2 coding downstream 254793 669493 ~ 686239 (+)
CI01000043_00700044_00705027 NA coding downstream 284437 699137 ~ 705201 (+)
G189334 NA non-coding upstream 62426 351079 ~ 351447 (+)
G189296 NA non-coding upstream 66466 300804 ~ 347407 (+)
G189245 NA non-coding upstream 178261 234129 ~ 235612 (+)
G189262 NA non-coding upstream 184633 228820 ~ 229240 (+)
G189240 NA non-coding upstream 198164 210439 ~ 215709 (+)
G189281 NA non-coding downstream 12530 427230 ~ 430719 (+)
G189288 NA non-coding downstream 22803 437503 ~ 438239 (+)
G189289 NA non-coding downstream 111020 525720 ~ 527581 (+)
G189383 NA non-coding downstream 148954 563654 ~ 565387 (+)
G189384 NA non-coding downstream 149145 563845 ~ 595280 (+)
G190241 NA other downstream 1268856 1683556 ~ 1692479 (+)
G190272 NA other downstream 2027162 2441862 ~ 2443710 (+)
G191670 NA other downstream 3488533 3903233 ~ 3909966 (+)
G191644 NA other downstream 3893248 4307948 ~ 4350614 (+)
G192454 NA other downstream 4578313 4993013 ~ 4993356 (+)

Expression


Co-expression Network