G189288


Basic Information

Item Value
gene id G189288
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 437503 ~ 438239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU215004
ATTAAGGCGAGACACTACAGGTGAATAGGGATTTTTTTTAAATTAGAAGATATCACTCTGAAACTTCTCCAGTTTATTACTGGCATAAACATAAGAAAAAAATGTATTACAAGTTTTGTGTAAATTGATGTTTTAATATGCAAATGAGGCCTTATATACTTAAATATACGCTCATTTGCATACATTTCCGAAAACAAAATCTGGAAATTGGAAAGGTTCAGGTTTAAAATTCTTGGTTCTATTTGTTGACATATTAGATGAAAGGGCTTTTACAGAGGGGATTCTGGATATCTTATTTTGTGCTTTAGTAAATTAGAGAATACTGACAATAGCCTTAAAAAATCTATTTTCGCCATGTTTTTTTGAGTAAAAGGACCTATAACTCAGGATAGGAATGATATATCAACAAATCCCTCTGTAAAAGTCTTCAGAATATAGATAGGAATAAAACTGTAAAGTTTGGTGTATATAAGTTCTGCTGAAGTGGAGATTTCTGACTCAGAACAGGAGAAAAAACTCATTTTGAGAAAACGGCCTTTAAAGATATTTACTGTAATTGAAATCTATAGACGCAAATAGATAAAGTGCTATAAGATATACACTTAAAAATGTATTTTGGATGTTTTCTTTCCACCAGTCTGAAAAAACACTTTATGAAAAGCCAAAAAGTGTAAAATCTCAAAATTGACAGGTGCCTGAAAAAACAGTGTTTTTGCCTGTAGTGTCTCCCCTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215004 True 737 lncRNA 0.31 1 437503 438239

Neighbor

gene id symbol gene type direction distance location
CI01000043_00372873_00405272 CACNB2, CACNB2A, CACB2 coding upstream 32078 372873 ~ 405425 (+)
CI01000043_00176126_00193756 NA coding upstream 243317 176076 ~ 194186 (+)
CI01000043_00174845_00175959 NA coding upstream 261438 172295 ~ 176065 (+)
CI01000043_00093397_00132783 SIPA1 coding upstream 304030 92844 ~ 133473 (+)
CI01000043_00040385_00051009 RASGRP2 coding upstream 386494 40327 ~ 51009 (+)
CI01000043_00449493_00494730 MYOM1B, MYOM1 coding downstream 11254 449493 ~ 494730 (+)
CI01000043_00529899_00530472 NA coding downstream 91609 529848 ~ 530885 (+)
CI01000043_00613106_00620046 METTL4 coding downstream 174867 613106 ~ 620487 (+)
CI01000043_00670862_00685333 ACER2 coding downstream 231254 669493 ~ 686239 (+)
CI01000043_00700044_00705027 NA coding downstream 260898 699137 ~ 705201 (+)
G189281 NA non-coding upstream 6784 427230 ~ 430719 (+)
G189340 NA non-coding upstream 22803 413873 ~ 414700 (+)
G189334 NA non-coding upstream 86056 351079 ~ 351447 (+)
G189296 NA non-coding upstream 90096 300804 ~ 347407 (+)
G189245 NA non-coding upstream 201891 234129 ~ 235612 (+)
G189289 NA non-coding downstream 87481 525720 ~ 527581 (+)
G189383 NA non-coding downstream 125415 563654 ~ 565387 (+)
G189384 NA non-coding downstream 125606 563845 ~ 595280 (+)
G189377 NA non-coding downstream 147045 585284 ~ 587468 (+)
G189376 NA non-coding downstream 151849 590088 ~ 591256 (+)
G190241 NA other downstream 1245317 1683556 ~ 1692479 (+)
G190272 NA other downstream 2003623 2441862 ~ 2443710 (+)
G191670 NA other downstream 3464994 3903233 ~ 3909966 (+)
G191644 NA other downstream 3869709 4307948 ~ 4350614 (+)
G192454 NA other downstream 4554774 4993013 ~ 4993356 (+)

Expression


Co-expression Network