G189289


Basic Information

Item Value
gene id G189289
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 525720 ~ 527581 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU215005
ACTCGTTTTTTCTGTAATTTAATTAAAATTACCTCTGATAAAATTGCATTAAATACTGTATAGATACATCAATTCTATATAAAACAATAGTGGATTTAACATCAAAATATAAAGTTTTTAATGTAACCTCCATTTACACACTTTGGTTGGTTCAAGAATAATTTATGCAATTGTATATTGTTTATTTGAAAGAATTAAAGAGCAGTTTCATGTCTATCCTTGTATTGTTCAAGGTTGCTGTGGGAGAAAGTAATTGGTAATAAGTAATTCAATACTTTTTTAGAGAGTATTTAGTACAGTAATCTAATTACACTGTTAAAGATATAATTAGTATCTAGTGATAATTACTTTTTTTTGAGTAACTTACCCAACACTGCCCGTTAAACCGAGAATCTTATTAGTTAATAGAATGGTAACTGTTTCTCATTTGTTCCTGCATTGATTGATTAATGACGGAACATGTTTTTGTATAGCGCATCATTTTGTGTCGCTTTCCTCAGCAGAACCATCAAATATAGCATAAATATCCCAACCAAGGTGTCAGTTGCATGACTAGATCCTGTTTTGAAGTTTAATCACATGTATATTTATTCTCAAACACATTTCATCTGAGATAATTGAAATCCCGGGTTTTTCCTAATGCAAGCTGCTATGCTCGACAACAGAAGGCTACTTACTTGTTTCGTTGTCTCGAAACAGAGCTGGAATAAGGACTGCCCTGGAACAGACTATACCTCGACGGGGTCCCATGAGCCAAAGGAAAGGTAATAAGACTAATAATAACCCCTGCACAGAAGTGCACGTAACATCCAAGGACGCACTTCATTTCAAATCACCCAACCAGAGTCAGCATCCACCTTATTCAAGTATTTAAAATAAGTTCAACTAAAAACGTTTTTAAAGTTTCTTGACAGAATGATGGCAGTGAAATGTGACAATGTTGCAAGTTCGCTCGAGCTCCCGCCCCGCAGAGCGCGCGCAGCTTTCCACTGGATGCTACAGAGCGGTATCAGGTTCCCAACTTTATTAGCGTTCTCCCAATAAAATTTGCATGTCAAACTGATTAGACGCTGCTTTATACGTGGTTATGCCATTTCTTTAAAACCTATTTCAAAAAAATCTAGCGCTGAATTAGCTGTGCGCAAGGTTTAAAAAAAGTTCAACAAGGTGATTTGGGTTGCTGACATGATACGCAGATATACTCCATCTACAAATTATATACATACATTATACATTAATTGAAATACTGTAAAAAGTAACTTTAAGTTAATTTGACACCACATGACTTTAATATTTAAGTGGCAATAAACAGGCTCTGTAGGTTACTCCACCTTTTGGTGTGAATCAAGTGTGTTTATGTAGGCTATAACACTCTTTAAAAGGTACAACATATAGACAGCTATTGTAATACATTATAATATGCATTACAAAAAGAATACAGAGGTTGAGCTTTCCTGTGAAGCAAGTTACCTGATTTCAGCAAATCAAAACGGTTATTTTAGATTTTGGCATAGCACTCTGAACTGCGAACAAAAAAGTAAAAAAAAAAAAAAAAATGTATATATACGTGCTGCATCCAAAATCACATATTGTAGGTACAACGTGTGGTTTGAAATTTACTTCACAACTGTTCAAAAAGATTCTAAATAGTGTGAATATGTGCGGTATGAATGAAATTCTGACATACTACATCCGCCATGTTGTCATTATCATGTGACCTACAGTGTCAGTTGCGTTGCTTCACTTCCAATCACAAATCCACTCCCGTGGCCTCATGGGATAGTAAAGTGTCCATCGATTGCACAATTTACAAATTTTACTAGAAGTAGTAGGTCATCTGCATACTTTTTGCCTACTGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215005 True 1862 lncRNA 0.35 1 525720 527581

Neighbor

gene id symbol gene type direction distance location
CI01000043_00449493_00494730 MYOM1B, MYOM1 coding upstream 30990 449493 ~ 494730 (+)
CI01000043_00372873_00405272 CACNB2, CACNB2A, CACB2 coding upstream 120295 372873 ~ 405425 (+)
CI01000043_00176126_00193756 NA coding upstream 331534 176076 ~ 194186 (+)
CI01000043_00174845_00175959 NA coding upstream 349655 172295 ~ 176065 (+)
CI01000043_00093397_00132783 SIPA1 coding upstream 392247 92844 ~ 133473 (+)
CI01000043_00529899_00530472 NA coding downstream 2267 529848 ~ 530885 (+)
CI01000043_00613106_00620046 METTL4 coding downstream 85525 613106 ~ 620487 (+)
CI01000043_00670862_00685333 ACER2 coding downstream 141912 669493 ~ 686239 (+)
CI01000043_00700044_00705027 NA coding downstream 171556 699137 ~ 705201 (+)
CI01000043_00713100_00730032 ACO1 coding downstream 185519 713100 ~ 732043 (+)
G189288 NA non-coding upstream 87481 437503 ~ 438239 (+)
G189281 NA non-coding upstream 95001 427230 ~ 430719 (+)
G189340 NA non-coding upstream 111020 413873 ~ 414700 (+)
G189334 NA non-coding upstream 174273 351079 ~ 351447 (+)
G189296 NA non-coding upstream 178313 300804 ~ 347407 (+)
G189383 NA non-coding downstream 36073 563654 ~ 565387 (+)
G189384 NA non-coding downstream 36264 563845 ~ 595280 (+)
G189377 NA non-coding downstream 57703 585284 ~ 587468 (+)
G189376 NA non-coding downstream 62507 590088 ~ 591256 (+)
G189374 NA non-coding downstream 75320 602901 ~ 603278 (+)
G190241 NA other downstream 1155975 1683556 ~ 1692479 (+)
G190272 NA other downstream 1914281 2441862 ~ 2443710 (+)
G191670 NA other downstream 3375652 3903233 ~ 3909966 (+)
G191644 NA other downstream 3780367 4307948 ~ 4350614 (+)
G192454 NA other downstream 4465432 4993013 ~ 4993356 (+)

Expression


Co-expression Network