G189445


Basic Information

Item Value
gene id G189445
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 1414956 ~ 1415629 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU215183
AGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAATCATAGGATAATTTACCCCATTCATTTTTGGGTGAACTATCCCTTTAAGGTAACCTTTTTATGTCAGTTAATAGCAGGTTTTGTTGTAGCCCATTTTAAAAGATTCCCAACCCATTACTGTCAATGTAAATGTCTGGTTTCAGAAATGTTTTGTACATTATTTTCTGCACAGAGCTTGGGTATGGAGTCATGTCACGTTCGATATGTGTGGCTTTAATAATGCAACATGTATGTTGCAAATCTGCTTTGTAAATTGCTGTAGCAATATGTTACAACACCTGATGGGGTGTATCTTTTGGAGTGGCAGACTTTTTACCATAGTAAAAACTACTACTGAAGGATTTGCCACTGCTCTGGACGATTTTTTTTGTGTTTCCATAAAGAAGCAGATATATCTAAATGAGGCTGTGTGTGATTTTGTGTGTGGATTTGATAGAGTGTGTGTGTATTTCGGGTCAAGGGGACTGTGTTTGGCTGTGTTATCTTCTATTTGTCTCCTATCCATGTTGCCTTCTGCTGAGTCCTAACCAATGCCTTTGTAGTTGTACGTATTGTACAATCTTTGTTGTGAATTTTCTTTTTTATGTGTAGTTCTCATCAGCCTCACCATGCCAATAAAGGGAATTGTGTCTAATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU215183 True 674 lncRNA 0.38 1 1414956 1415629

Neighbor

gene id symbol gene type direction distance location
CI01000043_01383746_01406582 PPARGC1A coding upstream 8363 1382179 ~ 1406593 (+)
CI01000043_01366462_01369312 NA coding upstream 45069 1366462 ~ 1379702 (+)
CI01000043_00930835_00959810 BRAFLDRAFT_59675, DHX15 coding upstream 454745 930329 ~ 960211 (+)
CI01000043_00898380_00913554 NA coding upstream 501309 898380 ~ 913647 (+)
CI01000043_00878804_00886856 NA coding upstream 527986 878804 ~ 886970 (+)
CI01000043_01423076_01424727 NA coding downstream 7175 1422804 ~ 1424730 (+)
CI01000043_01626021_01650266 ADGRA3 coding downstream 210392 1626021 ~ 1651813 (+)
CI01000043_01704935_01732125 NA coding downstream 289204 1704833 ~ 1732221 (+)
CI01000043_01842605_01846888 NA coding downstream 424454 1833978 ~ 1846921 (+)
CI01000043_01896926_01915626 KCNIP4 coding downstream 481297 1896926 ~ 1915626 (+)
G189565 NA non-coding upstream 332664 1082113 ~ 1082292 (+)
G189487 NA non-coding upstream 386822 1027241 ~ 1028134 (+)
G189477 NA non-coding upstream 395043 1019614 ~ 1019913 (+)
G189461 NA non-coding upstream 436525 978016 ~ 978431 (+)
G190206 NA non-coding downstream 116083 1531712 ~ 1532051 (+)
G190216 NA non-coding downstream 141528 1557157 ~ 1557452 (+)
G190220 NA non-coding downstream 151016 1566645 ~ 1566951 (+)
G190221 NA non-coding downstream 158877 1574506 ~ 1574725 (+)
G190249 NA non-coding downstream 171917 1587546 ~ 1594020 (+)
G190241 NA other downstream 267927 1683556 ~ 1692479 (+)
G190272 NA other downstream 1026233 2441862 ~ 2443710 (+)
G191670 NA other downstream 2487604 3903233 ~ 3909966 (+)
G191644 NA other downstream 2892319 4307948 ~ 4350614 (+)
G192454 NA other downstream 3577384 4993013 ~ 4993356 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G143010 NA non-coding NC_053125.1 CM020922.1 13023741 ~ 13037410 (-)