Gene
RNA
| Item | Value |
|---|---|
| gene id | G191086 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 3138396 ~ 3139814 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU217025 | True | 1419 | lncRNA | 0.41 | 1 | 3138396 | 3139814 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_02945803_03044928 | ZFHX3 | coding | upstream | 93468 | 2945803 ~ 3044928 (+) |
| CI01000043_02884506_02898339 | NA | coding | upstream | 240032 | 2884418 ~ 2898364 (+) |
| CI01000043_02834135_02840882 | NA | coding | upstream | 297383 | 2832049 ~ 2841013 (+) |
| CI01000043_02787002_02807892 | NA | coding | upstream | 329540 | 2786832 ~ 2808856 (+) |
| CI01000043_02504537_02519367 | CRISPLD2, CRLD2 | coding | upstream | 617764 | 2501923 ~ 2520632 (+) |
| CI01000043_03157095_03221503 | NA | coding | downstream | 16903 | 3156717 ~ 3222623 (+) |
| CI01000043_03270751_03284680 | NA | coding | downstream | 130937 | 3270751 ~ 3284762 (+) |
| CI01000043_03292361_03301513 | NA | coding | downstream | 152547 | 3292361 ~ 3301513 (+) |
| CI01000043_03600460_03603309 | NA | coding | downstream | 460461 | 3600275 ~ 3603404 (+) |
| CI01000043_03630982_03636231 | PSMD7, PSD7, PSMD7.L | coding | downstream | 489490 | 3629304 ~ 3636429 (+) |
| G191067 | NA | non-coding | upstream | 29104 | 3109039 ~ 3109292 (+) |
| G191066 | NA | non-coding | upstream | 29406 | 3108649 ~ 3108990 (+) |
| G191064 | NA | non-coding | upstream | 30438 | 3107711 ~ 3107958 (+) |
| G191063 | NA | non-coding | upstream | 30693 | 3107212 ~ 3107703 (+) |
| G191058 | NA | non-coding | upstream | 39432 | 3098331 ~ 3098964 (+) |
| G191094 | NA | non-coding | downstream | 9390 | 3149204 ~ 3149688 (+) |
| G191097 | NA | non-coding | downstream | 11813 | 3151627 ~ 3151854 (+) |
| G191117 | NA | non-coding | downstream | 31021 | 3170835 ~ 3171075 (+) |
| G191133 | NA | non-coding | downstream | 48004 | 3187818 ~ 3188056 (+) |
| G191150 | NA | non-coding | downstream | 66075 | 3205889 ~ 3206111 (+) |
| G190272 | NA | other | upstream | 694686 | 2441862 ~ 2443710 (+) |
| G190241 | NA | other | upstream | 1445917 | 1683556 ~ 1692479 (+) |
| G191670 | NA | other | downstream | 763419 | 3903233 ~ 3909966 (+) |
| G191644 | NA | other | downstream | 1168134 | 4307948 ~ 4350614 (+) |
| G192454 | NA | other | downstream | 1853199 | 4993013 ~ 4993356 (+) |
| CI01000043_05114193_05114497 | BOLA3 | other | downstream | 1974072 | 5114193 ~ 5114497 (+) |
| CI01000043_05169578_05171795 | CLEC3A | other | downstream | 2029791 | 5169578 ~ 5171848 (+) |
